DY259735

Overview
NameDY259735
Unique NameDY259735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1030
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9399 contig Ccv1_Contig9399:124..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259735 vs. ExPASy Swiss-Prot
Match: ADH1_KLULA (Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.124e-11
Identity = 43/139 (30.94%), Postives = 60/139 (43.17%), Query Frame = 1
Query:  106 DVRLKVLYCGICHTDLSNIKNEWGF-SLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 519
            ++ + V Y G+CHTDL   K +W   +  P+V GHE AG V                       +C SCE C    E+ CP+  L+       G    G +  +  A+     + P    L   AP+LCAG+TVY  LK
Sbjct:   35 ELLINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWKIGDFAGIKWLNGSCMSCEYCELSNESNCPEADLS-------GYTHDGSFQQYATADAVQAAKIPVGTDLAEVAPVLCAGVTVYKALK 166          
BLAST of DY259735 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.960e-11
Identity = 42/139 (30.22%), Postives = 59/139 (42.45%), Query Frame = 1
Query:  106 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 519
            ++ + V Y G+CHTDL   K +W   +  P+V GHE AG V                       +C SCE C    E+ C +  L+       G    G +  +  A+     + P    L   AP+LCAG+TVY  LK
Sbjct:   60 EILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNCLQADLS-------GYTHDGSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKALK 191          
BLAST of DY259735 vs. ExPASy Swiss-Prot
Match: ADH2_KLUMA (Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus GN=ADH2 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.960e-11
Identity = 42/139 (30.22%), Postives = 57/139 (41.01%), Query Frame = 1
Query:  106 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 519
            ++ + V Y G+CHTDL   K +W      P+V GHE AG V                       +C +CE C    E+ CP   L+       G    G +  +  A+       P    L   AP+LCAG+TVY  LK
Sbjct:   33 ELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVAMGDNVKGWKIGDLAGIKWLNGSCMNCEECELSNESNCPDADLS-------GYTHDGSFQQYATADAVQAAHIPAGTDLAQVAPILCAGVTVYKALK 164          
The following BLAST results are available for this feature:
BLAST of DY259735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ADH1_KLULA3.124e-1130.94Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN... [more]
ADH4_KLULA6.960e-1130.22Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH2_KLUMA6.960e-1130.22Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YA13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259735 ID=DY259735; Name=DY259735; organism=Citrus clementina; type=EST; length=1030bp
TCACGAGAAGAAGAACATCCAGTAAAGGCCTTTGGGTGGGCAGCCCGAGA
CAGCTCCGGCCATCTCTCCCCATTCAAATTCTCCAGAAGGGAAACGGGTG
ATGAGGATGTGAGGCTGAAGGTATTGTATTGTGGGATCTGCCATACTGAT
CTCTCCAACATCAAGAATGAATGGGGCTTCTCTCTCTTCCCTATGGTTCC
TGGGCATGAAATTGCAGGGGAAGTGACAGAAGTTGGTAGCAAAGTAAGAA
AGGTTAAAGTGGGAGATAAAGTTGGAGTTGGATGCATGGTCGGTGCATGC
CACAGCTGCGAGAGCTGTGCCAATGACCTTGAAAATTACTGTCCGAAAAT
GATACTCACCTACAGTTCCATTAACACTGACGGAACAATCACATACGGAG
GCTACTCTGATCACATGGTTGCCAATGAGCGCTACATTGTTCGATTCCCT
GATAGCATGCCCCTTGATGCTGCTGCCCCCCTGCTTTGCGCCGGGATTAC
CGTGTACAGTCCATTGAAATACTTTGGACTAGCAGAACAAGGAAAGCATG
TAGGCATCGTTGGCCTTGGCGGGCTTGGTCATGTCGCTGTCAATTTGCCA
AGGCTTTTGGGGCCAAAGTGACAGTAATTAGCACCTCTCCAAGCCAGAAG
ACTGAAGTTCTTGAACATCTTGGCCCTGATTCATTTTTGAAAACCCGTGA
CCCTGAACAATTGCAGGGTGCTATGGCCACTTGGATGGGATTATTGACAC
CGGGTCCCCCTGGGCCCCCATTTTGCCCTGGTCCGTCCATTAAATTCCCA
GGGCAGCTTGGTTCTGGTTGTGCCCCGAACACCCCCCCAACCTACCTTGA
ATTCCCTAATATGGGGAAAAAAAAGGGTTCGGGGACCCCCCCGGGGGAAA
AAAAAAACCCAAAAAAAATTAATTTCCCCAAAAACCAAAAAACCCCCAAA
CTTGGGGTTTTTTCAAGGTTTTTTCTAAACCCCAAGGGAAAGGTGGCCCC
GGGGGAAGGTCCCGACCATTTTTCCCTTAA
back to top