DY259744

Overview
NameDY259744
Unique NameDY259744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length983
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259744_ssr284 microsatellite DY259744_ssr284:284..295. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.706e-12
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   80 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG+
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65          
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA1_POLPE (60S acidic ribosomal protein P1 OS=Polyorchis penicillatus PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.242e-11
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query:   80 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            E AC Y+ LILHDD  A+TAEK+  ++ AANV +E YWP LFA   E KN+ DLI NVGS
Sbjct:    8 ELACVYSALILHDD--AITAEKMNKIISAANVNVEPYWPGLFA--LEGKNIGDLICNVGS 63          
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA1_DICDI (60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.242e-11
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   68 IMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            I   E AC Y+ L+L DDGI +TA+KI  L++AAN+ + S+WP L+A+   K N+ +L+LN GS
Sbjct:    4 IKTEELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPELLLNAGS 67          
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA1_OSCBR (60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.928e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:   80 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            E AC YA LIL DD +A+T +KIA L+KAAN++ E +WP LFAK  E  ++ +LI +V S
Sbjct:    6 ELACVYAALILQDDEVAITGDKIATLLKAANIEFEPFWPGLFAKALEGVDVKNLITSVSS 65          
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA1_CHICK (60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   80 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     ++  LI NVG+
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICNVGA 65          
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   74 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            A E A +YA LIL D+GI +T++K+ +L KA NV++E  W ++FAK  E K+L +L+LN+GS
Sbjct:    3 ASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGS 64          
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA3_SCHPO (60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe GN=rpa3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.524e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   74 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS
Sbjct:    3 ASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS 64          
BLAST of DY259744 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.524e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   74 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 259
            A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS
Sbjct:    3 ASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS 64          
The following BLAST results are available for this feature:
BLAST of DY259744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RLA1_BOVIN7.706e-1255.0060S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_POLPE2.242e-1160.0060S acidic ribosomal protein P1 OS=Polyorchis peni... [more]
RLA1_DICDI2.242e-1148.4460S acidic ribosomal protein P1 OS=Dictyostelium d... [more]
RLA1_OSCBR2.928e-1153.3360S acidic ribosomal protein P1 OS=Oscheius breves... [more]
RLA1_CHICK3.825e-1153.3360S acidic ribosomal protein P1 OS=Gallus gallus G... [more]
RLA5_SCHPO4.995e-1150.0060S acidic ribosomal protein P1-alpha 5 OS=Schizos... [more]
RLA3_SCHPO6.524e-1150.0060S acidic ribosomal protein P1-alpha 3 OS=Schizos... [more]
RLA1_SCHPO6.524e-1150.0060S acidic ribosomal protein P1-alpha 1 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YB01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259744 ID=DY259744; Name=DY259744; organism=Citrus clementina; type=EST; length=983bp
CTCAACCGCAGCAGCTCAAGCCAAACGCAGCCTCTCTTAGTGTGCGATTT
TAGAATTATCAATTGCAATAATGGCCGGAGAGCAAGCTTGCACCTACGCC
ACTTTGATTCTCCACGACGATGGAATCGCAGTCACTGCGGAGAAGATCGC
GGCTTTGGTTAAGGCAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCC
TTTTTGCGAAGTTGGCTGAAAAGAAAAACTTGGATGATCTCATCTTGAAT
GTTGGCTCCGGTGGCGGTGCTGCCGCACCCGTTGCCGCCGCCGCCCCTGC
TGGTGGTGCCGCAGCCGCCGCTCCTGCCGCTGAGGAGAAAAAGGAAGAAC
CTAAGGAAGATAGTGATGATGATATGGGATTCAGTTTGTTTGATTAAGCA
CCGCATTCAGTTGAGTCACAAATTGATACCCATCTTTTTTTCTTCCTGTT
TTTGCCTTTACCGCACTCGCCAGACTGCATCTCAAGAGGTAAAAATCATA
TAATTTAGTCCTTAATTTATGAGTCTACTCACTCCTGTTGTCATCCCTCC
ACCCCGTCCCTCTATTTAGACTACGGACGAATCACTATTCCAATAAAACT
TAAACCTAAAATAGTCCTCATCCTTCTTGCTAGGCATTGGGCACTTACAC
TGTTCCCCCCTATTCTTCTTTATTGAAAGAATACTTTCTATTTATAAAAT
ACTATAAGTGAATACTAACACCCATGCTGTATTCTCTAACACCCACGGAT
AATTCACCAAAATGAACAATACCACGAAGCCAACCCACAGTCACCATATT
AATCTAACACCAATTAATTTCTCATACCTTTTCTGAAACTATTATCACTT
GAATACATATATCAAATTTTCTTGCATATTAAACCCCGCAAAGCGTAACT
ACCCGATTACTACTCTTCTCTCACTCCTCTCCTGTCACCACCCCTCTCAT
CTACCTTCTCCCCAATCTCTTTCTCTCCTCACC
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