DY259749

Overview
NameDY259749
Unique NameDY259749
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_ECO27 (Glutamate 5-kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            Q  +L++ G  I++V+SGA+  GR+ L Y +L          P      +  AAVGQS L+ L++ LFS   +   Q+L+T +D  D +      DT+++LLD  ++P+ NENDAV+T
Sbjct:   34 QCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL----------PATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVAT 141          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_ECO24 (Glutamate 5-kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=proB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            Q  +L++ G  I++V+SGA+  GR+ L Y +L          P      +  AAVGQS L+ L++ LFS   +   Q+L+T +D  D +      DT+++LLD  ++P+ NENDAV+T
Sbjct:   34 QCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL----------PATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVAT 141          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_CYAP7 (Glutamate 5-kinase OS=Cyanothece sp. (strain PCC 7424) GN=proB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  171 EQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 533
            E L +L + G++++LVSSGAVGVG  RL  +          ++P++    +A AAVGQ  L+ +YD LF+ L    +Q+L+T  +  D       Y+T  +L +L VIPI NEND V+  +
Sbjct:   32 ETLTKLKTSGYQVVLVSSGAVGVGCGRLSRK----------ERPKDIAMKQAIAAVGQGRLIRVYDDLFNTLGQPIAQILLTRRELIDRRSYVNAYNTFAALFELGVIPIVNENDTVAVEE 142          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_CITK8 (Glutamate 5-kinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=proB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            Q  +L++ G  I++V+SGA+  GR+ L Y +L          P      +  AAVGQS L+ L++ LFS   +   Q+L+T +D  D +      DT+++LLD  ++P+ NENDAV+T
Sbjct:   34 QCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL----------PATIASKQLLAAVGQSRLIQLWEQLFSIYGIHIGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVAT 141          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_ANAVT (Glutamate 5-kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=proB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  171 EQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVS 524
            E L  L  QG ++ILVSSGAVGVG  RL             ++P+     +A AAVGQ  LM +YD LF+ L    +Q+L+T SD         +Y+T + LL L VIP+ NEND V+
Sbjct:   32 ETLSYLRQQGNQVILVSSGAVGVGCARLGLT----------ERPKAIALKQAVAAVGQGRLMRVYDDLFTTLQQPIAQVLLTRSDLVQRSRYLNVYNTFRELLALGVIPVVNENDTVA 139          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_ANASP (Glutamate 5-kinase OS=Anabaena sp. (strain PCC 7120) GN=proB PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 50/118 (42.37%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  171 EQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVS 524
            E L  L  QG  +ILVSSGAVGVG  RL             ++P+     +A AAVGQ  LM +YD LF+ L    +Q+L+T SD         +Y+T + LL L VIP+ NEND V+
Sbjct:   41 ETLSHLRQQGNRVILVSSGAVGVGCARLGLT----------ERPKAIALKQAVAAVGQGRLMRVYDDLFTTLQQPIAQVLLTRSDLVQRSRYLNVYNTFRELLALGVIPVVNENDTVA 148          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_PHOLL (Glutamate 5-kinase OS=Photorhabdus luminescens subsp. laumondii GN=proB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.719e-14
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            Q  + + +G  II+V+SGA+  GR+ L Y  L          P      +  AAVGQS L+ L++  FS   +   Q+L+T +D  D +      DT+Q+LLD R++P+ NENDAV+T
Sbjct:   35 QCAQQHEKGHRIIIVTSGAIAAGREHLGYPDL----------PATIASKQLLAAVGQSRLIQLWEQFFSIYGIHVGQMLLTRADLEDRERFLNARDTLQALLDNRIVPVINENDAVAT 142          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_CARHZ (Glutamate 5-kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=proB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.719e-14
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  183 ELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 533
            +L + GFE+I+VSSGA+  G  RL          A  +KP+N  + +ACAAVGQ  LM LY+  FS+  V ++Q+L+T  D            T  +LL+  V+P+ NEND V+  +
Sbjct:   42 DLKNAGFEVIIVSSGAIAAGMGRL----------ALPEKPKNLPEKQACAAVGQGVLMHLYEKFFSEYQVIAAQVLLTGEDLAVRKRFLNAKHTFSALLNYGVVPVVNENDTVAVEE 148          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB2_BACLD (Glutamate 5-kinase 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=proB2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.719e-14
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  171 EQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPY 542
            EQ+  L  +G E++LVSSGAV  G     YRKL       + +P    + +A A+VGQ  L+  Y  LF      +SQ+L+T SDF DE     + +T+  LL   +IPI NEND V+  +  +
Sbjct:   34 EQIVRLKDEGHEVLLVSSGAVAAG-----YRKL-----GFINRPDTLPEKQASASVGQGLLIEAYSKLFLSHGYIASQILITKSDFSDEKRYNNVRNTMNVLLKRGIIPIINENDTVTVNRLKF 147          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_SYNP2 (Glutamate 5-kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=proB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  171 EQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVS 524
            E L  L  +G  +ILVSSGAVGVG   L+            ++P+   + +A AAVGQ  L+ LYD LF+ L    +Q+L+T  D  D      + + + ++LDL VIPI NEND V+
Sbjct:   32 ETLTRLKQKGHRVILVSSGAVGVGCGVLKRS----------ERPKKIAEKQAIAAVGQGRLIRLYDDLFTSLQQAIAQVLLTRRDLVDRTSYLTVQEALNAMLDLSVIPIVNENDTVA 139          
The following BLAST results are available for this feature:
BLAST of DY259749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
PROB_ECO277.442e-1436.44Glutamate 5-kinase OS=Escherichia coli O127:H6 (st... [more]
PROB_ECO247.442e-1436.44Glutamate 5-kinase OS=Escherichia coli O139:H28 (s... [more]
PROB_CYAP77.442e-1438.02Glutamate 5-kinase OS=Cyanothece sp. (strain PCC 7... [more]
PROB_CITK87.442e-1436.44Glutamate 5-kinase OS=Citrobacter koseri (strain A... [more]
PROB_ANAVT7.442e-1442.37Glutamate 5-kinase OS=Anabaena variabilis (strain ... [more]
PROB_ANASP7.442e-1442.37Glutamate 5-kinase OS=Anabaena sp. (strain PCC 712... [more]
PROB_PHOLL9.719e-1437.29Glutamate 5-kinase OS=Photorhabdus luminescens sub... [more]
PROB_CARHZ9.719e-1438.46Glutamate 5-kinase OS=Carboxydothermus hydrogenofo... [more]
PROB2_BACLD9.719e-1437.90Glutamate 5-kinase 2 OS=Bacillus licheniformis (st... [more]
PROB_SYNP21.269e-1339.83Glutamate 5-kinase OS=Synechococcus sp. (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YB07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259749 ID=DY259749; Name=DY259749; organism=Citrus clementina; type=EST; length=919bp
CTTTTCCTTCTTCCTCTCCCCCACACAAAAACACACACATGATGGAATCT
TTCCAAGATCATACTCGTGACTTCCTCAAGAACGTCAAGCGTGTTGTTGT
TAAGGTTGGAACAGCTGTGGTTACTCGAAGTGATGGACGATTAGCTTTGG
GAAGGCTTGGAGCTCTTTTAGAGCAGCTTAAAGAGTTAAATTCTCAAGGC
TTTGAGATTATTTTAGTTTCTTCAGGCGCTGTTGGTGTTGGCCGCCAAAG
GCTTAGATACAGAAAATTGGTCAATAGCAGCTTGGCTGATCTCCAAAAGC
CGCAGAATGAGCTTGATGGGAAGGCTTGTGCCGCAGTTGGGCAGAGTAGT
CTCATGGCTCTTTATGATACCTTGTTCAGCCAGCTTGATGTGACCTCATC
CCAACTTCTTGTGACGGATAGTGATTTTAGGGATGAAGATTTCAGAAAGC
AACTCTATGACACTGTTCAATCATTGTTAGATTTGAGGGTTATTCCTATT
TTTAATGAAAATGACGCAGTTAGTACTAGGAAAGCACCATACGAGGTATC
TTGTTCCCTTCTGAATTAAAAATGAAACTTCCTGTGCATTTTTTTTTATT
AAAAATTCCTTTTCTTCCCCCTTGGGAATATTGAAATTTCCTTTTTCCTC
CCTTTTGGGACCTAAGGGGTTTGCCTACCTAGGTGAAATTTGTCCCCTTG
TGGAATATTTCTTATTCTTTATATTTAATTTCCATAAAAAACAAAAAACC
CAAGTGAAAAAAAAAAAACAAAAAAAACAAACCCAACCTTTCCTGCAAAA
ACCTCGGCAATACAAAAACTTTCTTCTTTACTTCTTTCTCCACCAACGGG
CCATTATAATACAATATAAACCCTCATTAACCATCGCACTCGTAATCCTC
AGAGCGCGTTCCCATTTGT
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