DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14665 contig Ccv1_Contig14665:3..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.379e-57
Identity = 109/152 (71.71%), Postives = 119/152 (78.29%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG 520
            MVKAVAVL  +EGV GT  F+Q G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA            TA+FT+ D QIP  GP SIIGRAVVV  DPDDLGKGGHELSK+TGNAGGR+AC IIG  G
Sbjct:    1 MVKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.801e-57
Identity = 108/152 (71.05%), Postives = 119/152 (78.29%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG 520
            M K V VL  +EGVKGT+ F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D+QIP  GPNSI+GRAVVV  +PDDLGKGGHELS TTGNAGGRVAC IIG  G
Sbjct:    1 MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 8.940e-57
Identity = 105/152 (69.08%), Postives = 118/152 (77.63%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG 520
            M K VAVL  +EGVKGT+ F+ EG+G TTV+G++SGL+PG HGFHVHALGD TNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D+QIP  GPNSI+GRA+VV  DPDDLGKGGHELS +TGNAGGRVAC IIG  G
Sbjct:    1 MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.992e-56
Identity = 102/152 (67.11%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG 520
            ++KAV VL G   VKG V F+QEGDGPTTV+G +SGL PG HGFHVHALGDTTNGCMSTGPHFNP GKEHG P D+NRHA            T  F++ D+QIP  GP+SI+GRAVVV  DPDDLGKGGHELSK+TGNAGGR+AC ++G  G
Sbjct:    3 LLKAVVVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 2.601e-56
Identity = 108/152 (71.05%), Postives = 118/152 (77.63%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG 520
            M K VAVL  +EGVKGT+ F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNG MSTGPHFNP GK+HG PED NRHA            TATFT+ D QIP  GPNSI+GRAVVV  DPD LGKGGHELS TTGNAGGRVAC IIG  G
Sbjct:    1 MGKGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.397e-56
Identity = 106/152 (69.74%), Postives = 115/152 (75.66%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG 520
            MVKAV VL G+ GV G + F+QE DGPTTV+G LSGL PG HGFHVHALGDTTNGC+STGPH+NPA KEHG PEDE RHA            TA FT+VD QIP  G  SIIGRAVVV  DPDDLGKGGHELSK+TGNAGGR+AC  IG  G
Sbjct:    1 MVKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.382e-49
Identity = 92/147 (62.59%), Postives = 108/147 (73.47%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAVAVL GT  V+G V+ +QE DGPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP G  HG PEDENRHA             A  T+VDNQIP  GPN+++GRA VV    DDLGKGGHELS +TGNAGGR+AC ++G
Sbjct:   70 KAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVG 216          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.080e-49
Identity = 94/147 (63.95%), Postives = 107/147 (72.79%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAVAVL GT  V+G V+ +QE DGPTTV+  +SGL PG HGFH+H  GDTTNGCMSTGPHFNP  K HG PEDE RHA             A  T+VDNQIP  GPNS++GRA+VV    DDLGKGGHELS TTGNAGGR+AC ++G
Sbjct:   72 KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVG 218          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.294e-47
Identity = 92/151 (60.93%), Postives = 106/151 (70.20%), Query Frame = 2
Query:   59 STMVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            S   KAVAVL GT  V+G V+ +Q+  GPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VDNQIP  GPNS++GRA VV    DDLGKGGHELS TTGNAGGR+AC +IG
Sbjct:   62 SAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIG 212          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.207e-47
Identity = 92/147 (62.59%), Postives = 105/147 (71.43%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAVAVL GT  V+G V+ SQE DGPTTVS  ++GL PG HGFH+H  GDTTNGCMSTG HFNP G  HG PED+ RHA             A  T+VD QIP  GPN++IGRA+VV    DDLGKGGHELS TTGNAGGR+AC ++G
Sbjct:   62 KAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 208          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC1_SOLLC1.379e-5771.71Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC1_BRAJU1.801e-5771.05Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_BRAOC8.940e-5769.08Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_PINSY1.992e-5667.11Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC2_BRAJU2.601e-5671.05Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_PANGI3.397e-5669.74Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODCP_SOLCS1.382e-4962.59Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL3.080e-4963.95Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_ARATH1.294e-4760.93Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_VITVI2.207e-4762.59Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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