DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14665 contig Ccv1_Contig14665:3..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.364e-35
Identity = 74/148 (50.00%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            + A+ V+ G +GV G ++F Q +   P  +SG +SGLK G HGFHVH  GDTTNGC+S G HFNP  KEHG P DENRH              +   + DN I  FG NSIIGR++VV    DDLG+G  + SK TGNAG R+ C II
Sbjct:    1 MSAICVIKG-DGVDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGII 147          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.364e-35
Identity = 76/147 (51.70%), Postives = 91/147 (61.90%), Query Frame = 2
Query:   74 AVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            AV V+ G E V G V F+QE  D P TV+  ++GL+ G HGFHVHA GDTTNGC+S GPHFNP GK HG P DE+RH                 T+ D  I  FG ++I+GR +VV  D DDLGKGG   S TTG AG R+ C +IG
Sbjct:    5 AVCVIKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIG 150          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.618e-35
Identity = 78/159 (49.06%), Postives = 95/159 (59.75%), Query Frame = 2
Query:   44 VLRSHSTMVKAVAVLGGTEG-VKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKG---GHELSKTTGNAGGRVACRII 508
            + R+ +    A+AVL    G + GT+ F Q+ +  TT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P DE RH             TA   + D  +   GPNSIIGR++VV  D DDLGKG     + S  TGNAGGRVAC I+
Sbjct:   38 IRRTITKTATAIAVLHSDNGNINGTIHFQQDKNS-TTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIV 195          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 9.618e-35
Identity = 72/147 (48.98%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+GT+ F  +G+    V+G++ GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              AT  + D+ I   G +SIIGR +VV   PDDLG+GG+E S  TGNAG R+AC +IG
Sbjct:    4 KAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 150          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.618e-35
Identity = 70/98 (71.43%), Postives = 74/98 (75.51%), Query Frame = 2
Query:  188 HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNA 481
            HGFHVHALGDTTNGCMSTGPHFNP GKEHG P+DENRHA             A   V D+QIP  G +SIIGRAVVV  DPDDLGKGGHELSKTTGN+
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNS 105          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.256e-34
Identity = 75/147 (51.02%), Postives = 89/147 (60.54%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I   G  SIIGR +VV   PDDLG+GG+E S  TGNAG R+AC +IG
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.641e-34
Identity = 73/148 (49.32%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+GT+ F Q+G GP  VSG+++GL  G HGFHVH   D T GC S GPHFNP  K+HG P+D+ RH              A  ++ D+ I   G  SIIGR +VV    DDLGKG +E S  TGNAG R+AC +IG
Sbjct:    3 MKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIG 150          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.143e-34
Identity = 74/149 (49.66%), Postives = 89/149 (59.73%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+GT+ F Q+  G P  +SG ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P DE RH              A  ++ D  I   G +SIIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    3 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 2.143e-34
Identity = 76/151 (50.33%), Postives = 87/151 (57.62%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G   V G ++F+QE +G P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HG P D  RH              A+  + D  +  FGP SIIGR +VV    DD GKGG+  S  TGNAG R AC +IG
Sbjct:    1 MVKAVAVLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 2.143e-34
Identity = 72/148 (48.65%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV V+ G   V+G + F Q+G GP  V+G ++GL  G HGFHVH  GD TNGC S G HFNP GK+HG P+D +RH              A   + D+ I   GP+ IIGR +VV    DDLG+GG   SK TGNAG R+AC +IG
Sbjct:    4 LKAVCVMKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHV-GDLGNVTAKGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIG 150          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC5_DICDI7.364e-3550.00Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC1_DICDI7.364e-3551.70Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODE_BRUPA9.618e-3549.06Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_PIG9.618e-3548.98Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_ASPJA9.618e-3571.43Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_BOVIN1.256e-3451.02Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_CANFA1.641e-3449.32Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_MOUSE2.143e-3449.66Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_CRYGA2.143e-3450.33Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_CHICK2.143e-3448.65Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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