DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14665 contig Ccv1_Contig14665:3..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.798e-34
Identity = 77/151 (50.99%), Postives = 91/151 (60.26%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAV VL G   V GTV+F QE +  PTT++  L+G  P    GFH+H  GD TNGC S GPHFNP GK HG P D  RH              A  ++ D+Q+   GP+S+IGR VVV    DDLGKGG+E S  TGNAG R AC +IG
Sbjct:    1 MVKAVCVLRGDAKVGGTVTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 3.655e-34
Identity = 74/151 (49.01%), Postives = 92/151 (60.93%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G+ GV G V+  Q  +  PTT++  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HG P+DENRH              A   + D+ +   GP S++GR+VVV    DDLGKGG+E S  TGNAG R AC +IG
Sbjct:    1 MVKAVAVLRGSAGVSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 4.773e-34
Identity = 73/149 (48.99%), Postives = 91/149 (61.07%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+G ++F Q E +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I   G +SIIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    3 MKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 4.773e-34
Identity = 77/151 (50.99%), Postives = 90/151 (59.60%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAV+ G   V+GTV F QE +  PTT+S  + G  P    GFH+H  GD TNGC S GPHFNP GK+HG PED+ RH              A  T  D  I   G +SI+GR +VV    DD GKGG E SKTTG+AG R AC +IG
Sbjct:    1 MVKAVAVVRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.234e-34
Identity = 77/149 (51.68%), Postives = 92/149 (61.74%), Query Frame = 2
Query:   74 AVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKG---GHELSKTTGNAGGRVACRII 508
            A+AVL G + V G + F Q+ +G PTTV+G + GL PG HGFH+H  GDTTNGC+S GPHFNP  K HG   DE RH             TA  ++ D  I   GPNSIIGR++VV  D DDLGKG     + S  TGNAG RVAC I+
Sbjct:    5 AIAVLRG-DTVSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIV 152          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.142e-34
Identity = 75/150 (50.00%), Postives = 90/150 (60.00%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGS-LSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            ++KAV VL G     GTV F QEG+      G  L GL PG HGFHVH  GD TNGC+S GPHFNPA K+H  P+DE+RH              A   + D +I   GP SIIGR +V+    DDLG+GG+E S  TGNAG R+AC +IG
Sbjct:    2 VLKAVCVLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIG 150          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.142e-34
Identity = 73/149 (48.99%), Postives = 88/149 (59.06%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+G + F Q+  G P  VSG ++GL  G HGFHVH  GD T GC + GPHFNP  K+HG P DE RH              A  ++ D  I   G +SIIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    3 MKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.063e-33
Identity = 78/151 (51.66%), Postives = 88/151 (58.28%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAV+ G   VKGTV F QE +  PTT++  +SG  P    GFH+H  GD TNGC S GPHFNP G  HG    E RH              A  TV DN +   GP S+IGR VVV    DDLGKGG+E S  TGNAG R AC +IG
Sbjct:    1 MVKAVAVVRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.063e-33
Identity = 74/147 (50.34%), Postives = 88/147 (59.86%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I   G  SIIGR +VV   PDDLG+GG+E S  TGNAG  +AC +IG
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.389e-33
Identity = 75/151 (49.67%), Postives = 90/151 (59.60%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAV VL G   V GTV+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HG P D  RH              A  +V D+ +   GP+S++GR VVV    DDLGKGG+E S  TGNAG R AC +IG
Sbjct:    1 MVKAVCVLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIG 151          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_PAETN2.798e-3450.99Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_CANGA3.655e-3449.01Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_HYLLA4.773e-3448.99Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_CANAL4.773e-3450.99Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_ONCVO6.234e-3451.68Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_XIPGL8.142e-3450.00Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_RAT8.142e-3448.99Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_NEUCR1.063e-3351.66Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_CAPHI1.063e-3350.34Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CORMI1.389e-3349.67Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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