DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14665 contig Ccv1_Contig14665:3..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.389e-33
Identity = 73/147 (49.66%), Postives = 89/147 (60.54%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+GT+ F  +G     V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD+ I   G +SIIGR +VV   PDDLG+GG+E S  TGNA  R+AC +IG
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 2.369e-33
Identity = 76/151 (50.33%), Postives = 89/151 (58.94%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G   + GTV+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HG PED  RH              A  +  D  I   G  S++GR +VV    DDLG+GG+E SK TGNAG R AC +IG
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.094e-33
Identity = 73/148 (49.32%), Postives = 89/148 (60.14%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I   G + IIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.094e-33
Identity = 73/148 (49.32%), Postives = 89/148 (60.14%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I   G + IIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 6.893e-33
Identity = 70/147 (47.62%), Postives = 85/147 (57.82%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+ T+ F Q+G GP  V G ++GL  G H FHVH  GD   GC S GPHFNP  K+HG P+DE RH              A   + D+ I   G  S+IGR +VV    DDLGKGG++ S  TGNAG R+AC +IG
Sbjct:    4 KAVCVLKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIG 150          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.176e-32
Identity = 74/149 (49.66%), Postives = 90/149 (60.40%), Query Frame = 2
Query:   71 KAVAVLGGTEG-VKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G    VKG ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A+ ++ D+ I   G + IIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    4 KAVCVLKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIG 152          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.536e-32
Identity = 75/151 (49.67%), Postives = 88/151 (58.28%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G   V GTV F QE +  PTT++  ++G       GFH+H  GD TNGC S GPHFNP GK HG P DE RH              A  +V D  +   GP+S+IGR VV+    DDLGKG +E S  TGNAG R AC +IG
Sbjct:    1 MVKAVAVLRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.536e-32
Identity = 74/151 (49.01%), Postives = 88/151 (58.28%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G   + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHG PEDENRH              A  +  D  I   G  S++GR +V+    DDLG+  H  SK TGNAG R AC +IG
Sbjct:    1 MVKAVAVLRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 2.006e-32
Identity = 76/151 (50.33%), Postives = 87/151 (57.62%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAV+ G   V G+V F QE + GPTT++  ++G       G H+H  GD TNGC S GPHFNP GK HG   DENRH              +  TV DN I   GP S+IGR VVV    DDLGKG  E S  TGNAG R AC +IG
Sbjct:    1 MVKAVAVVRGDSKVSGSVVFEQETENGPTTITWDITGHDANAKRGMHIHTFGDNTNGCTSAGPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 2.006e-32
Identity = 75/151 (49.67%), Postives = 87/151 (57.62%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            M KAVAVL G   V G V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHG PED+NRH              A  +  D  +   G NSI+GR VV+    DDLGKGG+  SK TGNAG R AC +IG
Sbjct:    1 MAKAVAVLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIG 151          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_CEREL1.389e-3349.66Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_ASPFU2.369e-3350.33Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_PANTR3.094e-3349.32Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN3.094e-3349.32Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_RABIT6.893e-3347.62Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_PONPY1.176e-3249.66Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_CLAPU1.536e-3249.67Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_ASPOR1.536e-3249.01Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_PODAN2.006e-3250.33Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC1_DEBHA2.006e-3249.67Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
back to top