DY262447

Overview
NameDY262447
Unique NameDY262447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1303
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262447_ssr15 microsatellite DY262447_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y1071_ORYSJ (Putative B3 domain-containing protein Os10g0537100 OS=Oryza sativa subsp. japonica GN=Os10g0537100 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.401e-32
Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  667 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS-------------GSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTG--GE*QLYIDWK 981
            ++ +FEK VTPSDVGKLNRLVIPKQHAE++FPL +             G   KGL+L+FED TGK WRFRYSYWNSSQSYV+TKGWSRF +EK   AGD  SF R  G     +L+ID++
Sbjct:   31 KEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAARGRLFIDFR 150          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y1160_ORYSJ (B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica GN=Os11g0156000 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.094e-30
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  667 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTG 951
            ++ +FEK +TPSDVGKLNRLVIPKQHAE++FPL +G  + KGL+L+FED  G  WRFRYSYW SSQSYVLTKGWSR+ +EK   AGD+  F R  G
Sbjct:   34 KEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRG 129          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: NGA4_ARATH (B3 domain-containing transcription factor NGA4 OS=Arabidopsis thaliana GN=NGA4 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 9.263e-30
Identity = 65/113 (57.52%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  604 IKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHR 942
            I+    D     + S+R    R+ +F+K +TPSDVGKLNRLVIPKQHAE  FPL+      G +L+F+D  GK+WRFRYSYWNSSQSYV+TKGWSRF +EK   AGD  SF+R
Sbjct:   10 IRASSSDHTNYFYSSER----REHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLEDNQN--GTVLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYR 116          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y8577_ORYSJ (Putative B3 domain-containing protein Os08g0157700 OS=Oryza sativa subsp. japonica GN=Os08g0157700 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.638e-28
Identity = 70/159 (44.03%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  511 EIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKA--RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTGGE*QLYIDWK 981
            ++ +   +    +E EQ+       A     +  G   GV    G   V+ A  R+ +F+K VTPSDVGKLNRLV+PKQHAE+ FP  +  T     L FED  G  WRFRYSYW SSQSYV+TKGWSRF +     AGD  SF R+  G  + +ID++
Sbjct:   13 QVEEATEEEEEEEEEEQALGQEPAPAAAAAALVLGRRHGVVVGGGGGGVVVAAEREHMFDKVVTPSDVGKLNRLVVPKQHAERFFPAAAAGTQ----LCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRAADG--RYFIDYR 165          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y6078_ORYSJ (B3 domain-containing protein Os06g0107800 OS=Oryza sativa subsp. japonica GN=Os06g0107800 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 2.789e-26
Identity = 67/126 (53.17%), Postives = 84/126 (66.67%), Query Frame = 1
Query:  610 HGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSK--GLLLNFEDVTG--KVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTGGE*QLYID 975
            HG G G     G +R    R+ +FEK VTPSDVGKLNRLV+PK +AEK+FPL   + +   G +L FED  G    WRFRYSYW+SSQSYV+TKGWSR+ ++K   AGD  SF R+     +L+ID
Sbjct:   21 HGGGGGGG---GGER----REYMFEKVVTPSDVGKLNRLVVPKHYAEKYFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFCRAGA---RLFID 136          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.456e-14
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  232 GVEAESRKLPSSKYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNF------KQMSCAGT-----SSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDEL 555
            G  ++ +K  SS+YKG+  +P GRW A+I +  K  RVWLGTFN  EEAA+AYD+ A+R RG  A  NF      K+ + A T      + E D+++A +SS   S  +D L +    D L
Sbjct:   12 GSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTL 132          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.646e-11
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  190 VGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQ 438
            VGS  +   ++S    E  S++   ++Y+G+  +P G+W A+I +  K  R WLGTF+  EEAA+AYD AA+R RG  A  NF +
Sbjct:  101 VGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPE 185          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.630e-11
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  676 LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYW--NSSQSYVLTKGWSRFGQEKNWKAGDICSFHR 942
            LFEK ++ SD G++ RLV+PK+ AE +FP  + S ++GL L  +D TGK W F++ +W  N+S+ YVL +G +   Q    +AGD  +F R
Sbjct:  452 LFEKMLSASDAGRIGRLVLPKKCAEAYFP--AISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLQAGDTVTFSR 539          
The following BLAST results are available for this feature:
BLAST of DY262447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
Y1071_ORYSJ3.401e-3259.17Putative B3 domain-containing protein Os10g0537100... [more]
Y1160_ORYSJ1.094e-3065.63B3 domain-containing protein Os11g0156000 OS=Oryza... [more]
NGA4_ARATH9.263e-3057.52B3 domain-containing transcription factor NGA4 OS=... [more]
Y8577_ORYSJ6.638e-2844.03Putative B3 domain-containing protein Os08g0157700... [more]
Y6078_ORYSJ2.789e-2653.17B3 domain-containing protein Os06g0107800 OS=Oryza... [more]
ERF73_ARATH5.456e-1440.50Ethylene-responsive transcription factor ERF073 OS... [more]
RAP22_ARATH5.646e-1141.18Ethylene-responsive transcription factor RAP2-2 OS... [more]
Y7633_ORYSJ9.630e-1142.86B3 domain-containing protein Os07g0563300 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262447 ID=DY262447; Name=DY262447; organism=Citrus clementina; type=EST; length=1303bp
ATTCAGCATCCCTCTCTTTCTTTCTTGTACCAGAACCTCTTGTAGACACA
CATAACACACATGAAAAGAGAAGAAATGGACGGAAGTTGCATGGACGAAA
GCACGACAACTGATTCAGCATCAACATCCCCGCCAATAACTTTCCCTCCG
AGCATCCCGCCGACCAAGTCGCCGGAGAGTCTTTGCCGAGTCGGCAGCGG
AGCCTCCAGCGTGATTCTCGACTCGGAAGCCGGCGTGGAGGCTGAGTCGA
GGAAGCTCCCGTCTTCCAAATACAAAGGGGTGGTCCCACAGCCGAATGGG
AGGTGGGGCGCCCAGATATACGAGAAGCACCAAAGGGTCTGGCTCGGCAC
CTTCAACGAGGAAGAGGAAGCTGCCAAGGCCTACGATATCGCTGCGCAGC
GTTTCCGCGGACGCGATGCCGTCACAAACTTCAAGCAAATGTCTTGTGCT
GGAACGTCCTCCGACGAGGGTGATATCGAAATGGCGTTCTTGAGCTCCCA
CTCCAAGTCCGAGATCGTCGATATGCTGAGGAAGCACACTTACAACGACG
AGCTCGAGCAGAGCAAAAGAAACTACGGCCTCGATGCCAACGGCAAGCGT
GTAATCAAACACGGGGAAGGTGATGGTGTTGCCACTGCCTTCGGTTCAGA
CCGGGTCCTTAAAGCGCGTGACCAGCTTTTTGAAAAGGCCGTTACCCCAA
GTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCAGCACGCGGAG
AAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGACTGCTCTTGAA
CTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTACTCCTACTGGA
ACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCGGTTCGGTCAG
GAGAAGAATTGGAAAGCCGGTGACATTTGTAGCTTTCACAGATCGACCGG
TGGGGAATAGCAGCTTTACATTGATTGGAAAGCCAGAACAGGACGGTCGA
GAACCCGGTCGAGCCCGTCAAAAGAAGAGGCTATTTGGGGTCAACATTTC
AAATTCCGGGGAAGGGTCTTGTTGGTGTCCAAAAAAATGGGGGCAAAATA
AAAAAAAAAACGAACGGCAAAAGGCTTAAAAAAAGGAACCTTTTGGCCTT
TTAAAGGGAACAAAAAAAAAAAAAAAAGAATTGGAAACCTTTCAAAAACT
CTTTTTTTTTTTTTTTTTTTCCTTTTTTTGAAAAAATTATATATTTCTTT
GTTTGGAAAAAATTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTT
TTT
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