DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_NEOFI (Dicer-like protein 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dcl1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.426e-18
Identity = 75/273 (27.47%), Postives = 123/273 (45.05%), Query Frame = 3
Query:   99 TSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSY-----QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMP 842
            T  P    +D   +VE  + Y+F   RLL  A+TH S   +  Y     QRLEF+GD+ L +     +F  +P  DP  L+  + A +S + L  ++VK GF++ +   +  L  ++  + E +  E   A   G++         PK L D+VE+   AI+VD  FD Q + + F   ++P    +++ +      P T L             C K G+   I         +A+V V G+ ++ A S     AK+ A+ +AL  L   +P
Sbjct: 1243 TEKPRGSEDDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEI--ESAQAESRGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLTNEYGCTNYCLKAGELPTID--GAPAGVLAAVIVHGNVISEARSSSSRYAKVKASEKALAVLDGLLP 1511          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_COCIM (Dicer-like protein 1 OS=Coccidioides immitis GN=DCL1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 6.426e-18
Identity = 70/256 (27.34%), Postives = 115/256 (44.92%), Query Frame = 3
Query:  126 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE---PIVTLEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            D    V+  + Y+FK  +LL  A TH SY  + +    YQRLEF+GDA L +A   +++  +P  DP  L+  + A +S + L  VAV+ G +  + H + +L  ++  + E +        D    +  +   PK L D+VE+   AI++D  F  + +   F+  L+     +T+ +      P T L             C K G+   +       + +A+V V    VA   +     AKL A+  AL KL
Sbjct: 1185 DLAAQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTYLHNRLAIDFGCSNYCLKAGEVPYVD--GPGTRVLAAVIVHDEVVAEGVASSSRYAKLKASEAALSKL 1438          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_ASPFU (Dicer-like protein 1 OS=Aspergillus fumigatus GN=dcl1 PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 8.393e-18
Identity = 76/263 (28.90%), Postives = 118/263 (44.87%), Query Frame = 3
Query:  123 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSY-----QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYK----FVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK-APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMP 842
            +D   +VE  + Y+F   RLL  A+TH S   +  Y     QRLEF+GD+ L +     +F  +P  DP  LS  + A +S + L  ++VK GF++    F     A +   V+E   A ++      Y    K  PK L D+VE+   AI+VD  FD Q +   F   ++P    +++ +      P T L             C K G+   I         +A+V V G+ ++ A S     AK+ A+ +AL  L   +P
Sbjct: 1250 DDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLTNEYGCTNYCLKAGELPTID--GAPATVLAAVIVHGNVISEARSSSSRYAKITASEKALAVLDGLLP 1510          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCR1_SCHPO (Protein Dicer OS=Schizosaccharomyces pombe GN=dcr1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.096e-17
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  138 YVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 587
            Y+E  I Y+FKNK+LL  A  H S         +YQ+LEF+GDA L   +  Y++  YP    G+L+  ++  +  + L+ +      +K+++H +AA+ D + E+ E +     TA     +   I +PK ++D +E++  AI++D  F LQ L  +
Sbjct: 1085 YIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENPWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFV 1242          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_ASPCL (Dicer-like protein 1 OS=Aspergillus clavatus GN=dcl1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.432e-17
Identity = 77/258 (29.84%), Postives = 121/258 (46.90%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK----VKEFAEAVSQEDNTAVYGGSIK-APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMP 842
            VE  + Y+F+  RLL  A+TH S T ST       YQRLEF+GD+ L +     +F  +P  DP  L+  + A +S + L  +AVK GF+K ++  +  L  +    V+E   A ++ +    Y    K  PK L D+VE+   AI+VD DF  + +   F+  ++P    +++ +      P T L             C K G+   I         +A+V V  S V+ A++     AK+ A+  AL  L   +P
Sbjct: 1253 VEEKLGYHFRYPRLLCSAVTHPS-TPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANKHPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAG--VLAAVIVHNSVVSEATASSSRYAKIRASERALVVLDGLLP 1507          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_ASPNC (Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dcl1 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.442e-17
Identity = 68/251 (27.09%), Postives = 117/251 (46.61%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE----AVSQEDNTAVYGGSIK-APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +E  ++Y F+   LL  A TH SY  + +    YQRLEF+GD+ + +     +F  +P  DP  L+  + A +S + L  +AVK G +  +++ +A L  ++ ++AE    A  + +    Y    K  PK L D+VE+   A++VD DF+ + +   FR  ++P    + + +      P T L             C K G+   I         +A+V V    +A  ++     AK+ A+ +AL  L
Sbjct: 1246 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAVDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANKHPTTFLHNRLTNEFGCVNYCLKAGEMPSID--GAPAGVLAAVIVHDVVIAEGTATSGRYAKVKASEKALAVL 1494          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_IDILO (Ribonuclease 3 OS=Idiomarina loihiensis GN=rnc PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.165e-17
Identity = 76/255 (29.80%), Postives = 120/255 (47.06%), Query Frame = 3
Query:  102 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL-EELQQQPQPVTLLFKLCQKNGK---QVDI------KHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            SLP P + +    +E I+ Y+F+ + LL +A+TH S   ST  +RLEF+GD+ LGL ++  ++  +P++  G LS +RAA +    LA++  K G   F+      L                     G  +   +LAD VE+I  AIY+D D D   +  +     EP +TL E    Q  P T L +L Q   K   + D+       H ++   N +   ++  F  + +S +K  A+  AA  AL  L +S
Sbjct:    2 SLPKPPLTE----LEKIVGYSFEQQGLLHQAMTHRS-ASSTHNERLEFLGDSILGLVIAEALYQKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELK-------------------SGGYRRESILADAVEAIIGAIYLDSDMD--TIRQVILNWFEPQLTLIEPGTSQKDPKTRLQELLQARQKPLPEYDVVATQGQAHNQQFTVNCSVEGIESPFKGTGTSRRK--AEQAAATAALEHLQES 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HELPJ (Ribonuclease 3 OS=Helicobacter pylori J99 GN=rnc PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.105e-17
Identity = 65/233 (27.90%), Postives = 119/233 (51.07%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKV-LADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +E  + Y+FK+KRLLE+ALTH S   + + +RLEF+GDA LGL +   ++  + Q D G+LS LRA+ +S     ++A       ++R S++    K +E    +S      + G  ++A    +  I++++    Y  +  DL+ L+M ++        L+EL Q    V   ++L Q+ G          +++   ++Y+     A+A  + K+ A+   A +AL KL ++
Sbjct:   21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRL--DLEHLFMDYK------TALQELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLKEA 238          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOK5 (Ribonuclease 3 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rnc PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.105e-17
Identity = 73/254 (28.74%), Postives = 119/254 (46.85%), Query Frame = 3
Query:  120 MEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ME   F+  VE  +N +F +K L++ ALTHSSY +        +R+EF+GD+ L L +S Y+FL Y     G+L+  R+  +    L  VA K    K+++ S      K +E               G  +   +LA+ VE+I AAIY+D  +   K ++I  F+ ++E  +           L+E+ QQ   + + + L +  G           RK    V V  + + S     K+ ++ NAA++AL KL
Sbjct:    1 MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISEYLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMS------KGEEIT-------------GGRERTSILANCVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLDYKTNLQEIVQQDGDIHIEYMLIKYEGPP-------HRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKKL 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOK1 (Ribonuclease 3 OS=Clostridium kluyveri (strain NBRC 12016) GN=rnc PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.105e-17
Identity = 73/254 (28.74%), Postives = 119/254 (46.85%), Query Frame = 3
Query:  120 MEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ME   F+  VE  +N +F +K L++ ALTHSSY +        +R+EF+GD+ L L +S Y+FL Y     G+L+  R+  +    L  VA K    K+++ S      K +E               G  +   +LA+ VE+I AAIY+D  +   K ++I  F+ ++E  +           L+E+ QQ   + + + L +  G           RK    V V  + + S     K+ ++ NAA++AL KL
Sbjct:    1 MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISEYLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMS------KGEEIT-------------GGRERTSILANCVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLDYKTNLQEIVQQDGDIHIEYMLIKYEGPP-------HRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKKL 228          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DCL1_NEOFI6.426e-1827.47Dicer-like protein 1 OS=Neosartorya fischeri (stra... [more]
DCL1_COCIM6.426e-1827.34Dicer-like protein 1 OS=Coccidioides immitis GN=DC... [more]
DCL1_ASPFU8.393e-1828.90Dicer-like protein 1 OS=Aspergillus fumigatus GN=d... [more]
DCR1_SCHPO1.096e-1731.01Protein Dicer OS=Schizosaccharomyces pombe GN=dcr1... [more]
DCL1_ASPCL1.432e-1729.84Dicer-like protein 1 OS=Aspergillus clavatus GN=dc... [more]
DCL1_ASPNC2.442e-1727.09Dicer-like protein 1 OS=Aspergillus niger (strain ... [more]
RNC_IDILO4.165e-1729.80Ribonuclease 3 OS=Idiomarina loihiensis GN=rnc PE=... [more]
RNC_HELPJ7.105e-1727.90Ribonuclease 3 OS=Helicobacter pylori J99 GN=rnc P... [more]
RNC_CLOK57.105e-1728.74Ribonuclease 3 OS=Clostridium kluyveri (strain ATC... [more]
RNC_CLOK17.105e-1728.74Ribonuclease 3 OS=Clostridium kluyveri (strain NBR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
back to top