DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_ASPOR (Dicer-like protein 1 OS=Aspergillus oryzae GN=dcl1 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 7.105e-17
Identity = 72/258 (27.91%), Postives = 118/258 (45.74%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMP 842
            VE  + Y FK  RLL  A TH SY  + +    YQRLEF+GD+ L +   + +F  YP  DP  L+  + A +S + L  +AVK G +  +RH +  L  ++  +AE +   +N +   G++         PK L D+VE+   A +VD DF  + +   F+  ++     +T+ +      P T L             C K G+   +     +   +A+V V    +A  ++     AK+ A+ +AL  L    P
Sbjct: 1244 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENES--QGAVDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANKHPTTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVS--VLAAVIVHEVVIAEGTASSGRYAKVKASEKALSVLENMGP 1497          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HELPG (Ribonuclease 3 OS=Helicobacter pylori (strain G27) GN=rnc PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 9.279e-17
Identity = 66/233 (28.33%), Postives = 118/233 (50.64%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKV-LADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +E  + Y+FK+KRLLE+ALTH S   + + +RLEF+GDA LGL +   ++  + Q D G+LS LRAA +S     ++A       ++R S++    K +E    +S      + G  ++A    +  I++++    Y  +  DL+ L+M ++        L+EL Q    V   ++L Q+ G          +++   ++Y+     A+A  + K+ A+   A  AL KL ++
Sbjct:   21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRAAIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRL--DLEHLFMDYK------TALQELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLKEA 238          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NITSB (Ribonuclease 3 OS=Nitratiruptor sp. (strain SB155-2) GN=rnc PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.212e-16
Identity = 71/239 (29.71%), Postives = 117/239 (48.95%), Query Frame = 3
Query:  144 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            E  + Y+F++K+LL+EALTH SY    + +RLEF+GDA L L +  Y+F  +P+ + G+LS LRA+ ++ E  A++A K    K++  S A              +E+N     G  K P +L++  E++  AIY  ++  L+K+  +   LLE                  L+E  Q    +T  +KL   +G         K    +A V +    +++A    K+ A+  AA+EAL
Sbjct:    8 EKKLGYSFEDKKLLKEALTHKSYKSPVNNERLEFLGDAVLDLVVGEYLFKKFPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQA--------------EENNQ----GRTK-PSLLSNAFEAVMGAIY--LEKGLEKVRELSLKLLEEAYPKIDLDSLFKDFKTALQEFTQAHYGITPTYKLLGSSGPD------HKKEFEVA-VLLHEETISTAKGRSKKAAQQEAAKEAL 218          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HELP2 (Ribonuclease 3 OS=Helicobacter pylori (strain P12) GN=rnc PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.212e-16
Identity = 70/250 (28.00%), Postives = 120/250 (48.00%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +E  + Y+FK+KRLLE+ALTH S   + + +RLEF+GDA LGL +   ++  + Q D G+LS LRA+ +S          HGF K  +  A AL D ++     VS  +  +      + P +L+   E++ A +Y++                     DL+ L+M ++        L+EL Q    V   ++L Q+ G          +++   ++Y+     A+A  + K+ A+   A +AL KL ++
Sbjct:   21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREKPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLKEA 238          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_MAGGR (Dicer-like protein 1 OS=Magnaporthe grisea GN=DCL1 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.583e-16
Identity = 63/210 (30.00%), Postives = 102/210 (48.57%), Query Frame = 3
Query:   96 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE----DNTAVYGGSIK-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVT 653
            L++ PS    +    ++N + Y FKN RLL  A  H SY     +  SYQRLEF+GD+ L +   +Y+F  +P  DP  L+  + A +S +    VAV  GF++ + H   AL   + E+AE V+++       AV  G  +              PK L DI+E+   A++VD  +D   +   F   ++P    +++ ++     PVT
Sbjct: 1231 LSTPPSQTQLELCSQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHPDKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPYFADMSIYDMYSSKHPVT 1440          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HELPY (Ribonuclease 3 OS=Helicobacter pylori GN=rnc PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.700e-16
Identity = 70/246 (28.46%), Postives = 119/246 (48.37%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +E  + Y+FK+KRLLE+ALTH S   + + +RLEF+GDA LGL +   ++  + Q D G+LS LRA+ +S          HGF K  +  A AL D ++     VS  +  +      + P +L+   E++ A +Y  ++  L K+  I + LL                   L+EL Q    V   ++L ++ G          +++   ++Y+     A+A  + K+ A+   A +AL KL ++
Sbjct:   21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREKPSILSSAFEALMAGVY--LEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLKEA 238          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACHD (Ribonuclease 3 OS=Bacillus halodurans GN=rnc PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.526e-16
Identity = 69/244 (28.28%), Postives = 117/244 (47.95%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQ------RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            +N  F NK+LL +A THSSY +    Q      RLEF+GDA L LA+S Y++ A+ Q+  G ++ LRA+ +    LA++A +  F + V      L  K +E               G  K P +LAD+ ES   A+Y+D   D   L++            F  +++    L+E  Q+     + +++ Q+ G          NR+ ++ V ++   +   +   K+ A+ +AA++AL  L+Q
Sbjct:   42 LNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYKAFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELV------LLGKGEEMT-------------GGRKRPALLADVFESFVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEIVQERGP-------AHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALITLSQ 259          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ARCB4 (Ribonuclease 3 OS=Arcobacter butzleri (strain RM4018) GN=rnc PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.605e-16
Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            +E  ++Y FKNK L+ EALTH S+    + +RLEF+GDA L L +  Y++L +P+ + G+LS +RA+ ++     R+A  +K G Y F+                + ++E N     G  KA  +L+D  E+I  AIY++   +  K  +I R L E        V   + +   Q +T   +       +++  +   ++K    S+++DG     AS + K++A+  AA+ A+ KL +
Sbjct:    7 LEKCLDYQFKNKNLIIEALTHKSFKKPYNNERLEFLGDAVLNLIVGEYLYLKFPKSNEGELSKIRASLVNETGFTRLANEIKLGEYIFI----------------STAEERNK----GRTKA-SILSDAFEAIMGAIYLESGLNTLKP-IILRILEESYDKINLDVLFSDYKTALQEITQA-RFASIPEYKIEGSYGPDHKKEFEVSIWIDGKNYGKASGKSKKLAQQAAAKIAIDKLKE 223          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACAC (Ribonuclease 3 OS=Lactobacillus acidophilus GN=rnc PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.015e-16
Identity = 66/239 (27.62%), Postives = 113/239 (47.28%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALXK 824
            ++N  N  F N++LLEEA THSSY++         Y++LEF+GDA L LA+SNY++  YP+L+ G+L+ LR+  + TE  +  A++ GF K +                      N     G+     +L D+ E+   A+++D      + ++     + P++   E        T L +L Q+NG  V+I++   +   + S +V     +           K+ A+  AA+ AL K
Sbjct:   10 LKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLG-------------------NGEEKAGARNRKTLLEDVFEAFNGALFLDQGMPAVERFLHL--TVYPLIAKGEFDDSRDYKTDLQELLQQNG-PVNIEYSVISESQLPSHFVVELKINDQVQTQGEGHNKKAAEQQAAKAALQK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HELPS (Ribonuclease 3 OS=Helicobacter pylori (strain Shi470) GN=rnc PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.026e-15
Identity = 69/245 (28.16%), Postives = 118/245 (48.16%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            +E  + Y+FK+KRLLE+ALTH S   + + +RLEF+GDA LGL +   ++  + Q D G+LS LRA+ +S          HGF K  +  A      ++++    S E+   +  G  K P +L+   E++ A +Y  ++  L K+  I + LL                   L+EL Q    V   ++L ++ G          +++   ++Y+     A+A  + K+ A+   A +AL KL +
Sbjct:   20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSA---------HGFTKLAKVIA------LQDYLHISSSEE---ISNGREK-PSILSSAFEALMAGVY--LEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLKE 236          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DCL1_ASPOR7.105e-1727.91Dicer-like protein 1 OS=Aspergillus oryzae GN=dcl1... [more]
RNC_HELPG9.279e-1728.33Ribonuclease 3 OS=Helicobacter pylori (strain G27)... [more]
RNC_NITSB1.212e-1629.71Ribonuclease 3 OS=Nitratiruptor sp. (strain SB155-... [more]
RNC_HELP21.212e-1628.00Ribonuclease 3 OS=Helicobacter pylori (strain P12)... [more]
DCL1_MAGGR1.583e-1630.00Dicer-like protein 1 OS=Magnaporthe grisea GN=DCL1... [more]
RNC_HELPY2.700e-1628.46Ribonuclease 3 OS=Helicobacter pylori GN=rnc PE=3 ... [more]
RNC_BACHD3.526e-1628.28Ribonuclease 3 OS=Bacillus halodurans GN=rnc PE=3 ... [more]
RNC_ARCB44.605e-1628.75Ribonuclease 3 OS=Arcobacter butzleri (strain RM40... [more]
RNC_LACAC6.015e-1627.62Ribonuclease 3 OS=Lactobacillus acidophilus GN=rnc... [more]
RNC_HELPS1.026e-1528.16Ribonuclease 3 OS=Helicobacter pylori (strain Shi4... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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