DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACC7 (Ribonuclease 3 OS=Bacillus cereus (strain AH187) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACC4 (Ribonuclease 3 OS=Bacillus cereus (strain B4264) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACC3 (Ribonuclease 3 OS=Bacillus cereus (strain 03BB102) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACC2 (Ribonuclease 3 OS=Bacillus cereus (strain G9842) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACC1 (Ribonuclease 3 OS=Bacillus cereus (strain ATCC 10987) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACC0 (Ribonuclease 3 OS=Bacillus cereus (strain AH820) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACAN (Ribonuclease 3 OS=Bacillus anthracis GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACAC (Ribonuclease 3 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACAA (Ribonuclease 3 OS=Bacillus anthracis (strain A0248) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3 
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_SYNFM (Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.899e-15
Identity = 74/257 (28.79%), Postives = 129/257 (50.19%), Query Frame = 3 
Query:  126 DAVFYVENIINYNFKNKRLLEEALTHSSYT------DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIF------RGLLEPI-----VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLA 830
            D +  ++N++ Y F ++ LL  AL H SY       D    + LEF+GDA LGLA+S+++   +P  + G+LS LR+A ++  +L R+AV+    +++      L  K +E              GG  KA  +LAD +E++ A+IY+D   D     ++KL+ ++        +L+ +       L+EL Q    +T ++ L ++ G   D K +  N      V ++G  +A  S + K+ A+  AA +AL  +A
Sbjct:    5 DGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHFLLEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYL------LLGKGEEMT------------GGRRKA-SLLADSLEALLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALDKDYKTQLQELTQARYKLTPVYVLDREEGPDHD-KTFHMN------VVLEGQVLAGGSGKSKKDAQQAAAEKALQIIA 235
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_BACC72.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain AH187) G... [more]
RNC_BACC42.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain B4264) G... [more]
RNC_BACC32.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain 03BB102)... [more]
RNC_BACC22.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain G9842) G... [more]
RNC_BACC12.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain ATCC 109... [more]
RNC_BACC02.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain AH820) G... [more]
RNC_BACAN2.985e-1527.82Ribonuclease 3 OS=Bacillus anthracis GN=rnc PE=3 S... [more]
RNC_BACAC2.985e-1527.82Ribonuclease 3 OS=Bacillus anthracis (strain CDC 6... [more]
RNC_BACAA2.985e-1527.82Ribonuclease 3 OS=Bacillus anthracis (strain A0248... [more]
RNC_SYNFM3.899e-1528.79Ribonuclease 3 OS=Syntrophobacter fumaroxidans (st... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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