DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HELAH (Ribonuclease 3 OS=Helicobacter acinonychis (strain Sheeba) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.899e-15
Identity = 69/243 (28.40%), Postives = 116/243 (47.74%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +E  + Y+FK+K LLE+ALTH S   + + +RLEF+GDA LGL +   ++  + Q D G+LS LRA+ +S +         GF K  R  A +L D ++     VS  + T+      + P +L+   E++ A +Y++   D  K+  I + LL                   L+EL Q    V   ++L ++ G          +++    +Y+     A+A  + K+ A+   A +AL KL
Sbjct:   16 LEKALGYSFKDKHLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSAQ---------GFTKLAR--AISLQDYLR-----VSSSEETS---KGREKPSILSSAFEALMAGVYLEAGLD--KVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP-------AHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKL 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISMO (Ribonuclease 3 OS=Listeria monocytogenes GN=rnc PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.092e-15
Identity = 69/248 (27.82%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++  + ++FKN  LL++A THSSY +          +RLEF+GDA L L +S+Y+F  YP +  G ++ +RAA +    L   A    F K+VR        K +E A             G    P +LAD+ ES   A+Y+D   D  K+      ++ P +              L+E+ Q+ + V + + +  + G          N+   A V V+G  +   S   K+ A+ +AA+ A+ KL
Sbjct:    7 LQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINKL 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACWK (Ribonuclease 3 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnc PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.092e-15
Identity = 69/246 (28.05%), Postives = 113/246 (45.93%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP-------AHNREFVSRVTLNNEALGLGSGKSKKEAEQQAAAEALKKLKE 243          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACCZ (Ribonuclease 3 OS=Bacillus cereus (strain ZK / E33L) GN=rnc PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.092e-15
Identity = 68/248 (27.42%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F          L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSF------GGLVLLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACLD (Ribonuclease 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rnc PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.650e-15
Identity = 69/242 (28.51%), Postives = 112/242 (46.28%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            I+  F+N++LL +A THSSY +          +RLEF+GDA L L +S +++  YP +  G L+ LRAA +    L  +A +  F + V      L  K +E               G  K P +LAD+ E+   A+Y+D   +    ++            F  +++    L+E  Q+     L +K+ Q+ G          NR+  A+V + G  +   S   K+ A+ +AA+EAL KL
Sbjct:   27 ISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELV------LLGKGEEMT-------------GGRKRPALLADVFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRDGRGILEYKILQEKGP-------AHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PELTS (Ribonuclease 3 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rnc PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.685e-15
Identity = 70/250 (28.00%), Postives = 119/250 (47.60%), Query Frame = 3
Query:  114 PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV--TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRK-----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            P+ +D +  ++N +   ++++ LL  ALTHSS+T         + QRLEF+GDA L LA+S+Y++ + P++D G L+ LRA+ +    LARVA                  +  E    +         GG  + P +LAD  E++  A+Y  +D  L+K   +    L P++   LE   ++     L   + Q+ G+QV     ++     ++   A V   G  V   +   K+ A+  AA++AL K
Sbjct:    2 PDAQDKLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLYRSKPEMDEGDLTKLRASVVCEPSLARVA------------------RELELGTCLYMGKGEERSGGRDR-PSILADAFEALLGAVY--LDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQELVQQRGGEQVQYVILKEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMK 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_GEOKA (Ribonuclease 3 OS=Geobacillus kaustophilus GN=rnc PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.685e-15
Identity = 69/246 (28.05%), Postives = 112/246 (45.53%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++N I   F+N++LL +A THSSY +          +RLEF+GDA L L +S Y+F  +P +  GQL+ LRAA +    L + A                      F E V       + GG  + P +LAD+ E+   A+Y+D   D     L+K          F  +++    L+EL Q+    TL + + ++ G          N++ +A V ++G  +       K+ A+ +AA+ AL  L
Sbjct:   21 LQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFA------------------NALSFGELVLLGKGEELTGGRTR-PALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILEEKGP-------AHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_WOLSU (Ribonuclease 3 OS=Wolinella succinogenes GN=rnc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.134e-14
Identity = 70/228 (30.70%), Postives = 111/228 (48.68%), Query Frame = 3
Query:  144 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI---KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            E  + Y F+NK LL EALTH SY    + +RLEF+GDA L L +  ++FL +P+ D G+LS +RA+ ++ +  A++A +    + +  S A  ++K +E    +S      +  G+I       V+ ++V  +   +Y  ID     L  +FR   +    L+EL Q     T  + +   +G         K    +A V V GS  A A    K+ A+  AAR AL
Sbjct:    8 EKRLGYRFQNKNLLIEALTHKSYKKPYNNERLEFLGDAVLDLVIGEFLFLKFPKADEGELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFEATM--GAIYLETGLSVVREVVHRLLDEVYPKID-----LGSLFR---DYKTALQELTQAKFGETPEYVILGSSGPD------HKKEFEVA-VCVLGSEYARACGSSKKEAQQEAARIAL 218          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_THETN (Ribonuclease 3 OS=Thermoanaerobacter tengcongensis GN=rnc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.134e-14
Identity = 68/247 (27.53%), Postives = 115/247 (46.56%), Query Frame = 3
Query:  138 YVENIINYNFKNKRLLEEALTHSSYT-----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIV----------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            Y+E  INY FK+K LL EALTHSS+      +  S +RLEF+GD+ L L +S Y++     L+ G LS  RA  +    LAR A K     F+R              E +S         G      +LAD +E++ AA+Y+D  ++   + +  +F+ +++ ++           L+E+ Q  +   + ++L ++ G          N+  +  V +    +     + K+ ++  AA EAL KL
Sbjct:    4 YLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKNRKDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGK----------GEEIS---------GGRDRDSILADAMEALLAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDYKTRLQEVVQSMEVGKITYELVEEIGPD-------HNKTFVTQVKIGDVVLGIGQGKSKKESEQAAAMEALSKL 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_SULNB (Ribonuclease 3 OS=Sulfurovum sp. (strain NBC37-1) GN=rnc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.134e-14
Identity = 73/243 (30.04%), Postives = 113/243 (46.50%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +E  +NY FK+K+L+ EALTH SY    + +RLEF+GDA L L +  Y+F  +P+ D G LS +RA+ ++      +A K     ++  S A              +E+N     G  K P +L++  E+I  A+Y++   D  K   I   LLE                  L+EL Q    VT  +++   +G         K    IA V +D   +A+A  + K+ A+  AA+ AL  L
Sbjct:    7 LEKRLNYTFKDKQLIIEALTHKSYKKPYNNERLEFLGDAVLDLIVGEYLFKKFPKSDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLA--------------EENN----NGRDK-PSLLSNAFEAIIGAVYLEAGLDTAK--EISIKLLEECHPKIDLQSLSKDYKTALQELTQATHAVTPGYEMLGSSGPD------HKKEFEIA-VTLDNKTIATAKGKSKKDAQQKAAKIALEAL 221          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_HELAH3.899e-1528.40Ribonuclease 3 OS=Helicobacter acinonychis (strain... [more]
RNC_LISMO5.092e-1527.82Ribonuclease 3 OS=Listeria monocytogenes GN=rnc PE... [more]
RNC_BACWK5.092e-1528.05Ribonuclease 3 OS=Bacillus weihenstephanensis (str... [more]
RNC_BACCZ5.092e-1527.42Ribonuclease 3 OS=Bacillus cereus (strain ZK / E33... [more]
RNC_BACLD6.650e-1528.51Ribonuclease 3 OS=Bacillus licheniformis (strain D... [more]
RNC_PELTS8.685e-1528.00Ribonuclease 3 OS=Pelotomaculum thermopropionicum ... [more]
RNC_GEOKA8.685e-1528.05Ribonuclease 3 OS=Geobacillus kaustophilus GN=rnc ... [more]
RNC_WOLSU1.134e-1430.70Ribonuclease 3 OS=Wolinella succinogenes GN=rnc PE... [more]
RNC_THETN1.134e-1427.53Ribonuclease 3 OS=Thermoanaerobacter tengcongensis... [more]
RNC_SULNB1.134e-1430.04Ribonuclease 3 OS=Sulfurovum sp. (strain NBC37-1) ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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