DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIAD (Ribonuclease 3 OS=Acinetobacter sp. (strain ADP1) GN=rnc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.134e-14
Identity = 68/238 (28.57%), Postives = 107/238 (44.96%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            +++ I Y FK   LL+ ALTH S +   +Y+RLEF+GD+ LG+ ++NY++ AYP  + G+L+ +RA  +  E L ++A      + +  S   L                     G      +LAD VE+I  AIYVD  D +L K  ++ +  +  +  +E   Q   P + L +  Q   K       VDI+    N+       V+G          +  A+  AA E L  L Q
Sbjct:   13 LQSRIGYEFKQLELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYQAYPHENEGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKS-------------------GGHHRESILADTVEAIIGAIYVDSNDLNLLKN-IVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILKLLEQ 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISMF (Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rnc PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14
Identity = 68/248 (27.42%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++  + ++FK+  LL++A THSSY +          +RLEF+GDA L L +SNY+F  YP +  G ++ +RAA +    L   A    F K+VR        K +E A             G    P +LAD+ ES   A+Y+D   D  K+      ++ P +              L+E+ Q+ + V + + +  + G          N+   A V V+G  +   S   K+ A+ +AA+ A+ +L
Sbjct:    7 LQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISMC (Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rnc PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14
Identity = 68/248 (27.42%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++  + ++FK+  LL++A THSSY +          +RLEF+GDA L L +SNY+F  YP +  G ++ +RAA +    L   A    F K+VR        K +E A             G    P +LAD+ ES   A+Y+D   D  K+      ++ P +              L+E+ Q+ + V + + +  + G          N+   A V V+G  +   S   K+ A+ +AA+ A+ +L
Sbjct:    7 LQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_DEHSC (Ribonuclease 3 OS=Dehalococcoides sp. (strain CBDB1) GN=rnc PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14
Identity = 70/250 (28.00%), Postives = 117/250 (46.80%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +EN +   F+   LLE+AL H+S+ +      S S +R+EF+GDA LG+  ++ ++  +P +  G L+  R+  +  E L RVA+     K++               E VS+        G  K P  LA   E++ AAIY+D   D+ +  ++ +F+  +E + T          L+EL Q    +T  +++   +G +        NR  IA VY +    A  S   K+ A+ NAA+ AL +   S
Sbjct:    7 LENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGR----------GEDVSK--------GRFK-PANLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRITNFSGPE-------HNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQFENS 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_DEHE1 (Ribonuclease 3 OS=Dehalococcoides ethenogenes (strain 195) GN=rnc PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14
Identity = 68/252 (26.98%), Postives = 116/252 (46.03%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +E  +   F+N  LLE+AL H+S+ +      S S +R+EF+GDA LG+  ++ ++  +P +  G L+  R+  +  E L RVA  +  G Y ++     A   + K                     P  LA   E++ AAIY+D  ID   + ++ +F+  +E + T          L+EL Q    +T  +++   +G +        N   IA VY +   +A  S   K+ A+ +AA+EAL +   S
Sbjct:    7 LEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFK---------------------PANLAGAFEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYRIIDFSGPE-------HNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQFENS 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACF3 (Ribonuclease 3 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rnc PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.935e-14
Identity = 69/249 (27.71%), Postives = 113/249 (45.38%), Query Frame = 3
Query:  138 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            Y+      +F N  LL EA T +SY +         Y+R+EF+GDA L L +S Y++  YP+L  G+L+ LRAA +  +  ++ A +  F +++R        K +E A             G+     +L DI ES   A+Y+D     ++  +Q +        W  F   ++   +L+E  Q+   V + + L  + G + D             V VDG  VA+     K+ A++ AA+ AL KL
Sbjct:    8 YLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLG------KGEEMA-------------GARNRASLLCDIFESFIGALYLDQGRQAVEQFIQTVIFPKLDLGW--FDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGGTENDPVF-------EVEVTVDGKKVATGQGSSKKHAEMEAAKHALEKL 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIBY (Ribonuclease 3 OS=Acinetobacter baumannii (strain AYE) GN=rnc PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.935e-14
Identity = 69/234 (29.49%), Postives = 101/234 (43.16%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            I Y FK   LL+ ALTH S +   +Y+RLEF+GD+ LG+ ++NY++ AYP  + G+L+ +RA  +  E L ++A      + +  S   L                     G      +LAD VE+I  AIY+D   DL  L  I      P +  +E   Q   P + L +  Q   K       VDI+    ++       VDG          +  A+  AA E L  L Q
Sbjct:   17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESILADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIBT (Ribonuclease 3 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rnc PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.935e-14
Identity = 69/234 (29.49%), Postives = 101/234 (43.16%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            I Y FK   LL+ ALTH S +   +Y+RLEF+GD+ LG+ ++NY++ AYP  + G+L+ +RA  +  E L ++A      + +  S   L                     G      +LAD VE+I  AIY+D   DL  L  I      P +  +E   Q   P + L +  Q   K       VDI+    ++       VDG          +  A+  AA E L  L Q
Sbjct:   17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESILADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACA2 (Ribonuclease 3 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rnc PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.527e-14
Identity = 68/242 (28.10%), Postives = 112/242 (46.28%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            I+ +F+N++LL +A THSSY +          +RLEF+GDA L L +S ++F  YP +  G L+ LRAA +    L  +A +  F   V      L  K +E               G  K P +LAD+ E+   A+Y+D   D  + ++            F  +++    L+E  Q+    +L +K+  + G          NR+  A V + G  +   +   K+ A+ +AA+EAL K+
Sbjct:   27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKILNEKGP-------AHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKM 242          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIBS (Ribonuclease 3 OS=Acinetobacter baumannii (strain SDF) GN=rnc PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.527e-14
Identity = 69/234 (29.49%), Postives = 101/234 (43.16%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            I Y FK   LL+ ALTH S +   +Y+RLEF+GD+ LG+ ++NY++ AYP  + G+L+ +RA  +  E L ++A      + +  S   L                     G      +LAD VE+I  AIY+D   DL  L  I      P +  +E   Q   P + L +  Q   K       VDI+    ++       VDG          +  A+  AA E L  L Q
Sbjct:   17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESILADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILKLLEQ 230          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_ACIAD1.134e-1428.57Ribonuclease 3 OS=Acinetobacter sp. (strain ADP1) ... [more]
RNC_LISMF1.481e-1427.42Ribonuclease 3 OS=Listeria monocytogenes serotype ... [more]
RNC_LISMC1.481e-1427.42Ribonuclease 3 OS=Listeria monocytogenes serotype ... [more]
RNC_DEHSC1.481e-1428.00Ribonuclease 3 OS=Dehalococcoides sp. (strain CBDB... [more]
RNC_DEHE11.481e-1426.98Ribonuclease 3 OS=Dehalococcoides ethenogenes (str... [more]
RNC_LACF31.935e-1427.71Ribonuclease 3 OS=Lactobacillus fermentum (strain ... [more]
RNC_ACIBY1.935e-1429.49Ribonuclease 3 OS=Acinetobacter baumannii (strain ... [more]
RNC_ACIBT1.935e-1429.49Ribonuclease 3 OS=Acinetobacter baumannii (strain ... [more]
RNC_BACA22.527e-1428.10Ribonuclease 3 OS=Bacillus amyloliquefaciens (stra... [more]
RNC_ACIBS2.527e-1429.49Ribonuclease 3 OS=Acinetobacter baumannii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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