DY262448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISW6 (Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.300e-14 Identity = 68/242 (28.10%), Postives = 114/242 (47.11%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKH-------WRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 ++ + ++F++ LL++A THSSY + +RLEF+GDA L L +SNY+F YP + G ++ +RAA + L A F K++R K +E A G P +LAD+ ES A+Y+D D K+ ++ P + E Q T L ++ Q++ + V I++ N+ A V V+G + S K+ A+ +AA+ A+ +L Sbjct: 7 LQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGEYLQTVDYKTQLQEIVQRD-RDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISIN (Ribonuclease 3 OS=Listeria innocua GN=rnc PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.300e-14 Identity = 67/248 (27.02%), Postives = 113/248 (45.56%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 ++ + ++F+N LL++A THSSY + +RLEF+GDA L L +S+Y+F YP + G ++ +RAA + L A F K+VR K +E A G P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A+ +L Sbjct: 7 LQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJE (Ribonuclease 3 OS=Campylobacter jejuni GN=rnc PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.310e-14 Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722 +E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G LS LRAA ++ + A++A F+ S V++E+N G + P +L+D +E+I AI+++ F+ K T+ +L +KN Q+D K K+ K Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEKPSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKNFPQIDAKILIKDYK 156
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISMH (Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rnc PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14 Identity = 67/248 (27.02%), Postives = 113/248 (45.56%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 ++ + ++FK+ LL++A THSSY + +RLEF+GDA L L +S+Y+F YP + G ++ +RAA + L A F K+VR K +E A G P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A+ +L Sbjct: 7 LQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACRJ (Ribonuclease 3 OS=Lactobacillus reuteri (strain JCM 1112) GN=rnc PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14 Identity = 63/255 (24.71%), Postives = 120/255 (47.06%), Query Frame = 3 Query: 120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 +E+ Y+ N +F N LL EA T +SY + Y+R+EF+GDA L L +S Y++ +P+L G+L+ LRAA + + ++ A + F +++R +E A G+ + P +L DI ES A+Y+D ++ +Q++ W F ++ +L+E Q+ + + + L +++G + D + +V +G + K+ A++ AA++AL + Sbjct: 2 IEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EEMA-------------GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGW--FDHAVDAKTSLQEFLQRDGDIAIEYHLVEESGTENDPEF-------KVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACRD (Ribonuclease 3 OS=Lactobacillus reuteri (strain DSM 20016) GN=rnc PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14 Identity = 63/255 (24.71%), Postives = 120/255 (47.06%), Query Frame = 3 Query: 120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 +E+ Y+ N +F N LL EA T +SY + Y+R+EF+GDA L L +S Y++ +P+L G+L+ LRAA + + ++ A + F +++R +E A G+ + P +L DI ES A+Y+D ++ +Q++ W F ++ +L+E Q+ + + + L +++G + D + +V +G + K+ A++ AA++AL + Sbjct: 2 IEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EEMA-------------GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGW--FDHAVDAKTSLQEFLQRDGDIAIEYHLVEESGTENDPEF-------KVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_GEOTN (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rnc PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14 Identity = 66/242 (27.27%), Postives = 109/242 (45.04%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +P + GQL+ LRAA + L + A F E V + GG + P +LAD+ E+ A+Y+D D+ ++ F +++ L+EL Q+ TL + + ++ G N++ +A V ++G + K+ A+ +AA+ AL L Sbjct: 25 IGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFA------------------NALSFGELVLLGKGEELTGGRTR-PALLADVFEAFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILEEKGP-------AHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALETL 240
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJR (Ribonuclease 3 OS=Campylobacter jejuni (strain RM1221) GN=rnc PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14 Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722 +E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G LS LRAA ++ + A++A F+ S V++E+N G + P +L+D +E+I AI+++ F+ K T+ +L +KN Q+D K K+ K Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGREKPSILSDALEAIIGAIHLEAGFEFTK-------------------------TIALRLIEKNFPQIDAKILIKDYK 156
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJD (Ribonuclease 3 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rnc PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14 Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722 +E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G LS LRAA ++ + A++A F+ S V++E+N G + P +L+D +E+I AI+++ F+ K T+ +L +KN Q+D K K+ K Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFTKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEKPSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLMEKNFPQIDAKILIKDYK 156
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJ8 (Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rnc PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14 Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722 +E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G LS LRAA ++ + A++A F+ S V++E+N G + P +L+D +E+I AI+++ F+ K T+ +L +KN Q+D K K+ K Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEKPSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKNFPQIDAKILIKDYK 156 The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 214
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bpback to top |