DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISW6 (Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.300e-14
Identity = 68/242 (28.10%), Postives = 114/242 (47.11%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKH-------WRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++  + ++F++  LL++A THSSY +          +RLEF+GDA L L +SNY+F  YP +  G ++ +RAA +    L   A    F K++R        K +E A             G    P +LAD+ ES   A+Y+D   D  K+      ++ P +   E  Q     T L ++ Q++ + V I++          N+   A V V+G  +   S   K+ A+ +AA+ A+ +L
Sbjct:    7 LQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGEYLQTVDYKTQLQEIVQRD-RDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISIN (Ribonuclease 3 OS=Listeria innocua GN=rnc PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.300e-14
Identity = 67/248 (27.02%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++  + ++F+N  LL++A THSSY +          +RLEF+GDA L L +S+Y+F  YP +  G ++ +RAA +    L   A    F K+VR        K +E A             G    P +LAD+ ES   A+Y+D   D  K+      ++ P +              L+E+ Q+ + V + + +  + G          N+   A V V+G  +   S   K+ A+ +AA+ A+ +L
Sbjct:    7 LQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJE (Ribonuclease 3 OS=Campylobacter jejuni GN=rnc PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.310e-14
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722
            +E  + Y FK+K LL  ALTH S+  S + +RLEF+GDA L L +  Y+F  + +   G LS LRAA ++ +  A++A       F+  S              V++E+N     G  + P +L+D +E+I  AI+++  F+  K                         T+  +L +KN  Q+D K   K+ K
Sbjct:    7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEKPSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKNFPQIDAKILIKDYK 156          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISMH (Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 67/248 (27.02%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++  + ++FK+  LL++A THSSY +          +RLEF+GDA L L +S+Y+F  YP +  G ++ +RAA +    L   A    F K+VR        K +E A             G    P +LAD+ ES   A+Y+D   D  K+      ++ P +              L+E+ Q+ + V + + +  + G          N+   A V V+G  +   S   K+ A+ +AA+ A+ +L
Sbjct:    7 LQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACRJ (Ribonuclease 3 OS=Lactobacillus reuteri (strain JCM 1112) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 63/255 (24.71%), Postives = 120/255 (47.06%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +E+   Y+    N +F N  LL EA T +SY +         Y+R+EF+GDA L L +S Y++  +P+L  G+L+ LRAA +  +  ++ A +  F +++R          +E A             G+ + P +L DI ES   A+Y+D     ++  +Q++        W  F   ++   +L+E  Q+   + + + L +++G + D +          +V  +G  +       K+ A++ AA++AL  +
Sbjct:    2 IEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EEMA-------------GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGW--FDHAVDAKTSLQEFLQRDGDIAIEYHLVEESGTENDPEF-------KVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACRD (Ribonuclease 3 OS=Lactobacillus reuteri (strain DSM 20016) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 63/255 (24.71%), Postives = 120/255 (47.06%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +E+   Y+    N +F N  LL EA T +SY +         Y+R+EF+GDA L L +S Y++  +P+L  G+L+ LRAA +  +  ++ A +  F +++R          +E A             G+ + P +L DI ES   A+Y+D     ++  +Q++        W  F   ++   +L+E  Q+   + + + L +++G + D +          +V  +G  +       K+ A++ AA++AL  +
Sbjct:    2 IEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EEMA-------------GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGW--FDHAVDAKTSLQEFLQRDGDIAIEYHLVEESGTENDPEF-------KVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_GEOTN (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 66/242 (27.27%), Postives = 109/242 (45.04%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            I   F+N++LL +A THSSY +          +RLEF+GDA L L +S Y+F  +P +  GQL+ LRAA +    L + A                      F E V       + GG  + P +LAD+ E+   A+Y+D   D+   ++            F  +++    L+EL Q+    TL + + ++ G          N++ +A V ++G  +       K+ A+ +AA+ AL  L
Sbjct:   25 IGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFA------------------NALSFGELVLLGKGEELTGGRTR-PALLADVFEAFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILEEKGP-------AHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALETL 240          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJR (Ribonuclease 3 OS=Campylobacter jejuni (strain RM1221) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722
            +E  + Y FK+K LL  ALTH S+  S + +RLEF+GDA L L +  Y+F  + +   G LS LRAA ++ +  A++A       F+  S              V++E+N     G  + P +L+D +E+I  AI+++  F+  K                         T+  +L +KN  Q+D K   K+ K
Sbjct:    7 LERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGREKPSILSDALEAIIGAIHLEAGFEFTK-------------------------TIALRLIEKNFPQIDAKILIKDYK 156          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJD (Ribonuclease 3 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722
            +E  + Y FK+K LL  ALTH S+  S + +RLEF+GDA L L +  Y+F  + +   G LS LRAA ++ +  A++A       F+  S              V++E+N     G  + P +L+D +E+I  AI+++  F+  K                         T+  +L +KN  Q+D K   K+ K
Sbjct:    7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFTKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEKPSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLMEKNFPQIDAKILIKDYK 156          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMJ8 (Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 722
            +E  + Y FK+K LL  ALTH S+  S + +RLEF+GDA L L +  Y+F  + +   G LS LRAA ++ +  A++A       F+  S              V++E+N     G  + P +L+D +E+I  AI+++  F+  K                         T+  +L +KN  Q+D K   K+ K
Sbjct:    7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEKPSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKNFPQIDAKILIKDYK 156          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_LISW63.300e-1428.10Ribonuclease 3 OS=Listeria welshimeri serovar 6b (... [more]
RNC_LISIN3.300e-1427.02Ribonuclease 3 OS=Listeria innocua GN=rnc PE=3 SV=... [more]
RNC_CAMJE4.310e-1429.38Ribonuclease 3 OS=Campylobacter jejuni GN=rnc PE=3... [more]
RNC_LISMH5.629e-1427.02Ribonuclease 3 OS=Listeria monocytogenes serotype ... [more]
RNC_LACRJ5.629e-1424.71Ribonuclease 3 OS=Lactobacillus reuteri (strain JC... [more]
RNC_LACRD5.629e-1424.71Ribonuclease 3 OS=Lactobacillus reuteri (strain DS... [more]
RNC_GEOTN5.629e-1427.27Ribonuclease 3 OS=Geobacillus thermodenitrificans ... [more]
RNC_CAMJR5.629e-1429.38Ribonuclease 3 OS=Campylobacter jejuni (strain RM1... [more]
RNC_CAMJD5.629e-1429.38Ribonuclease 3 OS=Campylobacter jejuni subsp. doyl... [more]
RNC_CAMJ85.629e-1429.38Ribonuclease 3 OS=Campylobacter jejuni subsp. jeju... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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