DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACSK (Ribonuclease 3 OS=Bacillus clausii (strain KSM-K16) GN=rnc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.629e-14
Identity = 69/242 (28.51%), Postives = 115/242 (47.52%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F+N++LL +A THSSY +      S+  +RLEF+GDA L LA+S Y+F  Y  +  G ++ LRA+ +    LAR A +  F K V      L  K +E            V GG  + P +LAD+ E+   A+Y  +D  L+ ++M     + P +              L+E  Q+     + + + Q+ G   D       R+ ++ V ++   + + +   K+ A+  AA++AL  L Q
Sbjct:   44 FENRKLLIQAFTHSSYVNEQRIFSSSDNERLEFLGDAVLELAVSQYLFKTYKNMSEGDMTKLRASIVCEPSLARFAEELQFGKLV------LLGKGEE------------VTGGRTR-PALLADVFEAFIGALY--MDQGLEPVFMFLARFMYPKIKEGAFTYKMDFKSQLQEFVQRDNRGQIRYLIVQERGPAHD-------REFVSDVQLNEETIGTGTGRSKKEAEQLAAKQALLALNQ 257          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACSU (Ribonuclease 3 OS=Bacillus subtilis GN=rnc PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 9.602e-14
Identity = 68/242 (28.10%), Postives = 112/242 (46.28%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            I+ +F+N++LL +A THSSY +          +RLEF+GDA L L +S ++F  YP +  G L+ LRAA +    L  +A +  F   V      L  K +E               G  K P +LAD+ E+   A+Y+D   +  + ++            F  +++    L+E  Q+    +L +K+  + G          NR+  A V + G  +   +   K+ A+ +AA+EAL KL
Sbjct:   27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKISNEKGP-------AHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_MYCMS (Ribonuclease 3 OS=Mycoplasma mycoides subsp. mycoides SC GN=rnc PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.254e-13
Identity = 73/238 (30.67%), Postives = 108/238 (45.38%), Query Frame = 3
Query:  159 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKH------WRKNRKNI---ASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            YN K  N++L  EALTH+SY +      SYQRLEF+GDA L + +S ++F  Y +L  G+L+ LRA+ +  E L RVA        V+        K  E                    P +LAD+ E++ AAIY+D   D    W + + L + I     +       + L +L Q   K+ D+K+      +  N   I    SV ++G          K+ A+ NAA + L KL
Sbjct:   10 YNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYE-------------------KPSILADVFEALTAAIYLDQKEDGLVTW-LGQTLFKYIKDSNFINDTKDFKSELQELLQSE-KRSDLKYIIEKEDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKL 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.254e-13
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKV 509
            +EN ++Y F +K LL +A  H SY       YQRLEF+GDA L   +++Y F  +P+L PGQL+ LR+ +++ E LA VAV     +F+   +  L + ++++   ++     +      + PK+
Sbjct: 1224 LENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKI 1348          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICBR (Ribonuclease 3 OS=Rickettsia bellii (strain RML369-C) GN=rnc PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.638e-13
Identity = 67/245 (27.35%), Postives = 111/245 (45.31%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +E +++Y+FKNK LL EAL+H S      Y  +  Y+RLEF+GDA L L ++  +F  + + + G L+ +R+  +  E +  V  K G   ++          +    E ++         G    P  + ++ E++ AAIY+D D       + KLW  F  +      +P   L+E  Q       +++L ++ G    + H         SV ++G          KE A+ NAARE L KL
Sbjct:    7 LEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIITEILFNNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYI----------IMTHGEEIA---------GGRDNPNNIENVTEALIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYRLIKREG----VAHL---STFTVSVKINGYEQTGKGHSIKE-AEKNAARELLHKL 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICB8 (Ribonuclease 3 OS=Rickettsia bellii (strain OSU 85-389) GN=rnc PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.638e-13
Identity = 67/245 (27.35%), Postives = 111/245 (45.31%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +E +++Y+FKNK LL EAL+H S      Y  +  Y+RLEF+GDA L L ++  +F  + + + G L+ +R+  +  E +  V  K G   ++          +    E ++         G    P  + ++ E++ AAIY+D D       + KLW  F  +      +P   L+E  Q       +++L ++ G    + H         SV ++G          KE A+ NAARE L KL
Sbjct:    7 LEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIITEILFNNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYI----------IMTHGEEIA---------GGRDNPNNIENVTEALIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYRLIKREG----VAHL---STFTVSVKINGYEQTGKGHSIKE-AEKNAARELLHKL 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HYDS0 (Ribonuclease 3 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rnc PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.638e-13
Identity = 60/193 (31.09%), Postives = 97/193 (50.26%), Query Frame = 3
Query:  126 DAVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI----FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQ 689
            D+   +E  I Y FK+K L+++A TH S++ S+ +Y+ LEF+GDA +     N +  A+P    G+LS L++  IS E LA +A    F K++      L  K +E               GS K P +L D+ E+  AAIY+D  +D +    +    F+  +  +V    L+Q  +  T L ++ QK  K+
Sbjct:    2 DSFELLEEKIGYRFKDKNLVKKAFTHISFSKSSENYEVLEFLGDALVNFMTVNILVEAFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYI------LISKGEELK-------------GSNKNPSILCDVFEAFWAAIYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYK--TALQEITQKKWKE 173          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOAB (Ribonuclease 3 OS=Clostridium acetobutylicum GN=rnc PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.638e-13
Identity = 71/250 (28.40%), Postives = 114/250 (45.60%), Query Frame = 3
Query:  117 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSY----QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHW-------RKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            E E  +  +E+ +   F+N  LL  ALTHSSY +        +RLEF+GDA L L++S Y F  YP +  G+L+  RA  +    L  +  +    K++R S                      + GG  +   ++AD VE++ AAIY+D  FD  K +++  F G ++  V  + +       T L ++ Q  GK  DIK+           RK   ++  D    ++     K+ A+ +AA +AL  L
Sbjct:    2 EEERLLEELESKLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEGELTKKRALVVCGMSLHSIGERWQLGKYIRMS------------------HGEELTGGRTRV-SIIADCVEAVIAAIYLDKGFDTAKNFILREFEGTIQNAVENKIILDYK---TRLQEILQSKGK-TDIKYTLVRHEGPPHRRKFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALKGL 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ANOFW (Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rnc PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.139e-13
Identity = 64/240 (26.67%), Postives = 111/240 (46.25%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F+N++LL +A THSSY +          +RLEF+GDA L L +S Y+F  +PQ+  G+L+ +RAA +    L   A          H+ +        F + V       + GG ++ P +LAD+ E+   A+Y+D   +    ++            F  +++    L+E  Q+     L +K+ Q+ G          N++ ++ V ++G  +       K+ A+  AA+ AL KL Q
Sbjct:   21 FRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYLFEQFPQMSEGELTKMRAAIVCEPSLVTFA----------HALS--------FGDLVLLGKGEELTGGRMR-PSLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQLQEFVQRDGSGVLEYKILQERGP-------AHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKLKQ 234          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRS7 (Ribonuclease 3 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rnc PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.649e-13
Identity = 66/252 (26.19%), Postives = 114/252 (45.24%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            +EN  N  F +KRLLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF ++    A     K +E               G      +L D+ E+   A+ +D   +  + ++       + +G  E +      L+EL Q    V + +++  + G    KQ ++           +V VD   ++  +   K++A+ +AA+ AL +L++
Sbjct:    8 LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLA------GFSRYCSFDAYIKLGKGEE-------------KSGGRHRDTILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETGPAHAKQFEV-----------AVLVDEDRLSKGTGRSKKLAEQDAAKNALAQLSE 229          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_BACSK5.629e-1428.51Ribonuclease 3 OS=Bacillus clausii (strain KSM-K16... [more]
RNC_BACSU9.602e-1428.10Ribonuclease 3 OS=Bacillus subtilis GN=rnc PE=3 SV... [more]
RNC_MYCMS1.254e-1330.67Ribonuclease 3 OS=Mycoplasma mycoides subsp. mycoi... [more]
DCL4_ARATH1.254e-1332.80Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
RNC_RICBR1.638e-1327.35Ribonuclease 3 OS=Rickettsia bellii (strain RML369... [more]
RNC_RICB81.638e-1327.35Ribonuclease 3 OS=Rickettsia bellii (strain OSU 85... [more]
RNC_HYDS01.638e-1331.09Ribonuclease 3 OS=Hydrogenobaculum sp. (strain Y04... [more]
RNC_CLOAB1.638e-1328.40Ribonuclease 3 OS=Clostridium acetobutylicum GN=rn... [more]
RNC_ANOFW2.139e-1326.67Ribonuclease 3 OS=Anoxybacillus flavithermus (stra... [more]
RNC_STRS73.649e-1326.19Ribonuclease 3 OS=Streptococcus equi subsp. zooepi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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