DY262452

Overview
NameDY262452
Unique NameDY262452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1232
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262452_ssr29 microsatellite DY262452_ssr29:29..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2314 contig Ccv1_Contig2314:1..1232. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262452 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.586e-38
Identity = 102/292 (34.93%), Postives = 151/292 (51.71%), Query Frame = 2
Query:  218 LEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXXXXXMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHF------KERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTID-SQITDPSVRDAVMKILKT-NPKLAGFNENECRK-DCWQGIITRVWPNTK 1066
            + + E  T +  +VQ++ L  IL  NA VEYL+  GL G TD  SF+  +PV+T+ D+   I R+A+GD SP+L +KP++    SSGT+ G+RK +                     ++  P ++ G+ + F++      T GGL A  V+T+  +S  F      + RP  P     SP+E +  PD  +S+Y  LLCGL    EV  V A FA   + A++ LE+ W  +  DIR G    +++T P+VR AV  IL   NP LA   E  C     W G+I  +WPN +
Sbjct:   18 MAWFERTTRDAADVQRETLRRILAENAGVEYLRELGLAGLTDAGSFRARVPVVTHADLDPYIQRVADGDASPVLTAKPVTAISLSSGTTQGKRKRLLFNDDLLRSSIRFFHASYAFTNRAFP-VEDGRVLQFMYGSRHETTKGGLTATTVMTNLLRSEEFTASMAARSRPRLP---SCSPSEVVFSPDFDESLYCHLLCGLLLAGEVRAVSASFAHSIVVALQALERVWRELCADIRRGAASPARVTTPAVRRAVAPILAAPNPALADALERRCAALGDWSGVIPALWPNAR 305          
BLAST of DY262452 vs. ExPASy Swiss-Prot
Match: GH36_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 5.614e-13
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  734 SPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQ-ITDPSVRDAVMK--ILKTNPKLAGFNENECRKDCWQGIITRVWPNTKLCGC 1078
            SP E IL  D  Q MY  LLCGL +   V  + A +A+   RA+R L+  W  +  D+  GT+ +  +TD ++R AV    +    P+LAG     C +D W+G++ ++WP+ +   C
Sbjct:   25 SPAEVILGADHQQQMYCHLLCGLRRWDAVDCIRAPYAAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRICERDDWRGVLRQLWPDARYISC 142          
The following BLAST results are available for this feature:
BLAST of DY262452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GH312_ORYSJ6.586e-3834.93Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ORYSJ5.614e-1334.75Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262452 ID=DY262452; Name=DY262452; organism=Citrus clementina; type=EST; length=1232bp
CACAAGCCTCTCTCTTTAGTCCCATTTATCTCTCTCTCTCTCTCTCTCTC
TCTCTCACAGACACACATACACACAAAAGAACACTCAAAATAAAACTCTT
TGAAGTTTATTAATTTTATCTCTTTCATACAAAACTGCCAAAGCCACCAC
CATGCCTGAAGCACCAAAGAACTCATACCCTAGTGATTATAGTCTTGATG
AGATGAACAAGAAGAAACTTGAGTTCATTGAAAATGTTACTTCAAACCCT
GATGAGGTTCAAAAGAAGGTTCTTTCAGAGATCCTCTTACGCAATGCTCA
TGTTGAGTACCTGCAAAGAAATGGCCTTAATGGCCACACCGATAGAGAGT
CTTTCAAAAAAACCATGCCTGTCATCACTTATGAAGATATCCAAGCTGAT
ATCAACCGTATTGCCAATGGAGATACTTCTCCTATCCTCTGCTCCAAGCC
CATTTCTGAGTTCTTGACTAGCTCTGGGACATCAGGTGGTGAACGAAAGT
TGATGCCAACAATTGAAGAAGAATTGGAGAGGAGGTCGCTGCTGTACAGC
CTATTGATGCCTGTGATGAGCCAGTTTATTCCTGGTCTAGACAAAGGCAA
AGGAATGTACTTTCTGTTCATAAAATCTGAGGCCAAGACTCCTGGTGGCC
TAGTGGCTCGCCCAGTCTTAACTAGCTATTACAAGAGCTGTCATTTCAAA
GAGAGGCCTTATGACCCATATACAAACTACACTAGCCCAAATGAAACCAT
TTTGTGCCCTGATTCTTACCAAAGCATGTACTCTCAATTGCTTTGTGGCC
TTTGCCAAAACAAAGAAGTCCTCAGGGTTGGTGCCGTTTTTGCCTCTGGT
TTCATTAGAGCTATTAGGTTTCTTGAGAAACATTGGCCTCTTGTCGTTAA
AGATATTAGAACTGGCACCATTGACTCCCAAATTACTGACCCATCTGTTA
GGGATGCTGTCATGAAGATCCTTAAAACAAACCCAAAACTTGCTGGTTTT
AATGAAAATGAATGCCGAAAAGACTGCTGGCAAGGGATCATAACAAGGGT
ATGGCCCAACACTAAATTATGTGGATGTTATTTGGGACGGGGAACCTGTT
AAAAATAAAACCCAAACCCTTGGATAACAAAACCAATGGCCCTCCCCCCT
TTGTTTGAACCCAGGGATGCGCTTTTCCTAGGGGGCCCACTTTGGGGGGG
CACACCCCTAACCCCCCCCCAAGCAAAAACCC
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