DY262456

Overview
NameDY262456
Unique NameDY262456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:13..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262456 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.301e-14
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  241 ETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 549
            ET S+LP  + + +  +I Y++  GW P LE            H +P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN  Q Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
BLAST of DY262456 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 35/102 (34.31%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  232 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 537
            +K  T SYLPP+ +  + +++ +++++GW P +E            H+ P +    YW MWKLPM+G TD   +L E+    +  P   VR+IG+DN  Q Q
Sbjct:   17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQ 106          
BLAST of DY262456 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  205 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 552
            M V     LKK+ET SYLP ++ E + ++I++ +  GW P +E   EKG   +            YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q Q ++F+
Sbjct:    1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105          
BLAST of DY262456 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  235 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 552
            K+ET SYLP +  E + ++I+YL+  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++G+DN  Q Q  +F+
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105          
BLAST of DY262456 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 1
Query:  241 ETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 552
            ET  +LPP++ + +  +I+Y++  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of DY262456 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 1
Query:  241 ETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 552
            ET  +LPP++ + +  +I+Y++  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of DY262456 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  235 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 552
            K+ET SYLPP++ E +  +I Y +  GW P +E    K  +             +YW MWKLP +G  +   VL E+   +  YP   V+++ +DN  Q   ++F+
Sbjct:   12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105          
The following BLAST results are available for this feature:
BLAST of DY262456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_HYDMR2.301e-1435.92Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_RHOCA5.667e-1334.31Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_NITVU5.667e-1333.62Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS1_THIFE7.401e-1334.91Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_SYNPX4.061e-1131.73Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNPW4.061e-1131.73Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_HALNC6.927e-1132.08Ribulose bisphosphate carboxylase small chain OS=H... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262456 ID=DY262456; Name=DY262456; organism=Citrus clementina; type=EST; length=860bp
CAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATC
GACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGG
TCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAG
AAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCA
ATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCT
CATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTAC
CTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGG
ATGGGTGTACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCT
ACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAG
GTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGT
CCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCC
TTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACC
ACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCA
TTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGT
TGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTT
TTTATATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATCT
GGGTCTCGGATGTTCAGTTTAATGAGTGAGAATTACTGGAAATAAAAGAG
TAGTTTTATG
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