DY262461

Overview
NameDY262461
Unique NameDY262461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1328
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262461 vs. ExPASy Swiss-Prot
Match: MARK1_HUMAN (Serine/threonine-protein kinase MARK1 OS=Homo sapiens GN=MARK1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.876e-11
Identity = 46/154 (29.87%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  238 RFSLRIGSGDIGSVYLTELKNQDSKSINNNSLFAAKVMDKKELASRSKEGRARTEREILELLDHPFLPTLYASIDSQRWLCLLTEFCPGGDLHVLRQRQRNKRFDEAAVRFYASEVVIALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLS 699
            R    IG G+   V L       ++ +      A K++DK +L   S +   R  R I+++L+HP +  L+  I++++ L L+ E+  GG++          +  EA  +F   ++V A++Y H   IV+RDLK EN+L+  D +I + DF  S
Sbjct:   61 RLQKTIGKGNFAKVKL-------ARHVLTGREVAVKIIDKTQLNPTSLQKLFREVR-IMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF--RQIVSAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFS 204          
BLAST of DY262461 vs. ExPASy Swiss-Prot
Match: CIPKO_ORYSJ (CBL-interacting protein kinase 24 OS=Oryza sativa subsp. japonica GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.876e-11
Identity = 44/152 (28.95%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  250 RIGSGDIGSVYL--TELKNQDSKSINNNSLFAAKVMDKKELASRSKEGRARTEREILELLDHPFLPTLYASIDSQRWLCLLTEFCPGGDLHVLRQRQRNKRFDEAAVRFYASEVVIALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLS 699
            R+G  ++G      T  K + +   +  +  A KV+DK  + +     + + E  I++++ HP +  L   +  +  + ++ E   GG+L     RQ   R +EA  R Y  +++ A+ Y H  G+ +RDLKPEN+L+ S G++ ++DF LS
Sbjct:   14 RVGRYEVGRTIGQGTFAKVKFAVDADTGAAVAMKVLDKDTILNHRMLHQIKREISIMKIVRHPNIVRLNEVLAGKTKIYIILELITGGELFDKIARQGKLRENEA--RKYFQQLIDAINYCHSKGVYHRDLKPENLLLDSRGNLKVSDFGLS 163          
BLAST of DY262461 vs. ExPASy Swiss-Prot
Match: CIPK6_ARATH (CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.876e-11
Identity = 39/149 (26.17%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  253 IGSGDIGSVYLTELKNQDSKSINNNSLFAAKVMDKKELASRSKEGRARTEREILELLDHPFLPTLYASIDSQRWLCLLTEFCPGGDLHVLRQRQRNKRFDEAAVRFYASEVVIALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLS 699
            +G G    VY        +++I      A KV+ K+++       + + E  ++ ++ HP +  L+  + S+  +    E   GG+L     +    R  E   R Y  +++ A+++ H  G+ +RDLKPEN+L+  +G++ +TDF LS
Sbjct:   30 LGHGTFAKVY-------HARNIQTGKSVAMKVVGKEKVVKVGMVDQIKREISVMRMVKHPNIVELHEVMASKSKIYFAMELVRGGELFA---KVAKGRLREDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLS 168          
The following BLAST results are available for this feature:
BLAST of DY262461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
MARK1_HUMAN9.876e-1129.87Serine/threonine-protein kinase MARK1 OS=Homo sapi... [more]
CIPKO_ORYSJ9.876e-1128.95CBL-interacting protein kinase 24 OS=Oryza sativa ... [more]
CIPK6_ARATH9.876e-1126.17CBL-interacting serine/threonine-protein kinase 6 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262461 ID=DY262461; Name=DY262461; organism=Citrus clementina; type=EST; length=1328bp
CTCTCTTTCTCTCTCTGCAGTTCAATGGAGCCATGGCTCGACGACTTATC
CGACGATTTACAGAGCGTGAGTTTCACGTCCACGAACACGACCGCCACAA
CGATCAACCGCAGCACAAGCTCGGGCTCCTTCGACGCCACCGCCTCACTC
ACCCCGGCTCCCTCCGCTCACAGCTCCTTCTCCTCCAAACCCAAATCCAC
CACTACAACAACTCACTCTCTCTCCTTCTCCGACATCCGCTTCTCCCTCC
GCATCGGCTCCGGCGACATCGGCTCCGTCTACTTAACCGAGCTCAAAAAC
CAAGACAGCAAAAGCATTAACAACAACTCTCTCTTCGCCGCTAAAGTGAT
GGACAAAAAAGAACTCGCTTCGAGAAGCAAAGAAGGCAGAGCAAGGACTG
AGCGGGAAATTCTGGAACTGTTGGACCATCCATTTTTGCCCACGCTTTAC
GCCAGTATAGACTCGCAGAGGTGGCTCTGTTTGTTAACGGAGTTCTGCCC
CGGCGGTGACCTCCACGTCCTCCGTCAACGCCAGCGTAATAAACGGTTCG
ATGAAGCCGCCGTCAGATTCTACGCATCGGAGGTGGTGATAGCGCTAGAA
TACCTTCACATGTTGGGAATTGTCTACCGTGATCTGAAGCCAGAAAATGT
GCTCGTTCGATCAGACGGACACATTATGCTAACGGACTTTGATCTGTCGT
TAAAATGTGATGATTCTGCATCAAATGCTCAGATTATTTCTGATCAAAAC
CCACCAATTGTGGTCCTACAAAATGAGTATCTAGTTGATCATCCTCCATT
CACATCCGCTTCATGCATTATTCCAAATTGCATTGTCCCTGCCGTGTCAT
GTTTTCGACCCAAGCGCANGCGGAAAAAGAAGACGGGCCAGCATAGTGGG
CCTGAATTTGTAGTCGAACCTGTTGATGTCCGGTCCATGTCATTTGTTGG
GACCACGAGTATTTGGCGCCGGAGATTGTGTCCGGTGAGGGTCATGGAAG
TCCTGGGGATTGGTGACACTAGGGGATATTTTATCCAACTATTTTATGGG
GTGACCCCCTTTAAGGGTGGGGACCACGAGCTAACTCTAGCTAAAATCCT
CCCCTCGAGCCCCTCAGTTTCCCAAGGGAACCGGGCCGGGGCCGCCCCGC
GGCAAAGGGCCCTGATTCTCCCAAAAAATATGGGCCAAGGGATCCGCAAA
AAGGGGGATAGGGGGGCCCCCAAAAGGGGGGCGGGCGCGGGCAAACCAAA
AACCCCACCCCCATTTTTTTTTTAGGGGGGGGGGAAAAAATGTGGGGGGG
GATGTGGGGAGGAAGGAAAAAGAAGCCC
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