DY262462

Overview
NameDY262462
Unique NameDY262462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12772 contig Ccv1_Contig12772:349..1217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.291e-33
Identity = 95/245 (38.78%), Postives = 126/245 (51.43%), Query Frame = 3
Query:   39 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 680
            S++ ++K+ F     L       P  + + +  A++AD     W PG   P +LDGS PGDFGFDPL LG  PE+L+   ++EL+H RWAML   GI +PE L     +    W    G Q  +  T        T+ VIE + I + E +R         +  DP             YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   Q   Y GTGP++NL  HLADP H
Sbjct:   25 SIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTA-GEQEYFTDT-------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGH 260          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.533e-32
Identity = 103/268 (38.43%), Postives = 130/268 (48.51%), Query Frame = 3
Query:    3 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP--------------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            + SCGI + AF    +SS K      + + A  +           T K   SA   P              GEP P YL G  PGD+G+D   L   PEN  + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:    1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 262          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32
Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3
Query:  132 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 659
            W PG   P +LDGS  GD GFDP  LG+  E L+                                           R++E ELIH RWAML   G +  EAL    W  A +   V G  ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K +  K+ EIK+ RLA++AF+ F + Q+A+ G GP+  LAT
Sbjct:   59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 84/193 (43.52%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  144 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            E  P YL G  PGD+G+D   L   PE   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  +   ++  I   + + + FVE  R       +   K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL+ H+ADP  NN
Sbjct:   35 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLSDHIADPVANN 225          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.800e-31
Identity = 84/193 (43.52%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  144 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            E  P YL G  PGD+G+D   L   PE   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  +   ++  I   + + + FVE  R       +   K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHVADPVANN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.658e-31
Identity = 85/193 (44.04%), Postives = 106/193 (54.92%), Query Frame = 3
Query:  153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R   +      DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QALVTGKGPLENLADHLADPVNNN 254          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.658e-31
Identity = 84/193 (43.52%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  144 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            E  P YL G  PGD+G+D   L   PE   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + + FVE  R       +   K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL+ H+ DP  NN
Sbjct:   63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLSDHINDPVANN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.777e-31
Identity = 85/193 (44.04%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.777e-31
Identity = 91/223 (40.81%), Postives = 118/223 (52.91%), Query Frame = 3
Query:   75 AVSLPAAANATSKYA----MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            A + PAAA+ +  Y     +    + GEP P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  +   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+K GRLA+L+  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:   37 AKAKPAAASGSPWYGPDRVLYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.777e-31
Identity = 87/199 (43.72%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  135 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            + GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG P  +   ++  I  ++ + +  VE  R          DP    YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
The following BLAST results are available for this feature:
BLAST of DY262462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB12_PETHY2.291e-3338.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY2.533e-3238.43Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB4C_ARATH5.643e-3238.81Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB25_SOLLC1.257e-3143.52Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP2.800e-3143.52Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_NICPL3.658e-3144.04Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_SOLLC3.658e-3143.52Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_TOBAC4.777e-3144.04Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_MAIZE4.777e-3140.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ4.777e-3143.72Chlorophyll a-b binding protein 1, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AB10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262462 ID=DY262462; Name=DY262462; organism=Citrus clementina; type=EST; length=880bp
CTCTGATGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCA
TCTTCTAAATCCAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAA
TGCAACCTCGAAATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCC
GGCCGCCTTATCTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCA
CTTCGGCTTGGCGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGA
ACTCATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGC
CAGAGGCATTGGGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCA
GTTCCTGGAGGACAAGCCACATACTTAGGCACCCCTGTTCCATGGGGCAC
TCTCCCCACAATTTTGGTCATTGAATTCCTTTCCATTGCCTTCGTTGAGC
ACCAACGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGT
GCTTTCGACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATA
CAAAGTCAAGGAGATAAAAAATGGGCGTTTGGCATTGCTGGCATTTGTGG
GTTTCTGCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAAC
TTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTAT
TATCCCCAGAGGGATTGTGCCTTGAAGAATTGCATTGTTAAATTATCCAA
TCCACTGTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGT
ATCTTTCTGACTGTAAGATTAGAAAGTAATTGTCCTCCAATGACGTTCAT
GCTAGAATCTAATACTATTGTGATTGCCAT
back to top