DY262462

Overview
NameDY262462
Unique NameDY262462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12772 contig Ccv1_Contig12772:349..1217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.177e-29
Identity = 79/191 (41.36%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            P YL G  PGD+G+D   L   PE  ++Y+E E+IH RWA+L   GIL PE L        G   W +A       GG   YLG+P  +    +   L ++ + +  +E  R       +     YPG +FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GP++NLA HLADP  NN
Sbjct:   56 PAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGG-LDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFV-QAIVTGKGPIQNLADHLADPGTNN 244          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.177e-29
Identity = 84/197 (42.64%), Postives = 106/197 (53.81%), Query Frame = 3
Query:  141 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG P  +   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:   60 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 250          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.537e-29
Identity = 88/223 (39.46%), Postives = 116/223 (52.02%), Query Frame = 3
Query:   75 AVSLPAAANATSKYA----MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            A + PAA++ +  Y     +    + GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG P  +   ++  I   + + +  +E  R          DP    YPGG FDPLG + DP+ F + KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   37 AKAKPAASSGSPWYGPDRVLYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.537e-29
Identity = 82/194 (42.27%), Postives = 104/194 (53.61%), Query Frame = 3
Query:  141 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            G P P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R       + E   YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENL+ HLADP  NN
Sbjct:   63 GSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLSDHLADPAVNN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.537e-29
Identity = 83/193 (43.01%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            P YL G  P D+G+D   L   PE   + +E E+IHCRWAML   G + PE         G   W +A       GG   YLG P  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.537e-29
Identity = 83/193 (43.01%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 257          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.537e-29
Identity = 83/196 (42.35%), Postives = 103/196 (52.55%), Query Frame = 3
Query:  144 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            E  P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  +E  R          DP    YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA H+ADP  NN
Sbjct:   62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHIADPVANN 252          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.621e-29
Identity = 84/197 (42.64%), Postives = 105/197 (53.30%), Query Frame = 3
Query:  141 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG+P  +   ++  I   + + +  +E  R          DP    YPGG FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:   76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.621e-29
Identity = 85/197 (43.15%), Postives = 105/197 (53.30%), Query Frame = 3
Query:  141 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            GEP P YL G  PGD+G+D   L   PE   + +E E+IH  WAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:    4 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 194          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.423e-29
Identity = 82/193 (42.49%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HL+DP +NN
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLSDPVNNN 256          
The following BLAST results are available for this feature:
BLAST of DY262462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB2_CHLMO1.177e-2941.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_MAIZE1.177e-2942.64Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB29_MAIZE1.537e-2939.46Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_POLMU1.537e-2942.27Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_PETSP1.537e-2943.01Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_PEA1.537e-2943.01Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_LEMGI1.537e-2942.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PINSY2.621e-2942.64Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_CUCSA2.621e-2943.15Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB28_PEA3.423e-2942.49Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262462 ID=DY262462; Name=DY262462; organism=Citrus clementina; type=EST; length=880bp
CTCTGATGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCA
TCTTCTAAATCCAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAA
TGCAACCTCGAAATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCC
GGCCGCCTTATCTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCA
CTTCGGCTTGGCGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGA
ACTCATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGC
CAGAGGCATTGGGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCA
GTTCCTGGAGGACAAGCCACATACTTAGGCACCCCTGTTCCATGGGGCAC
TCTCCCCACAATTTTGGTCATTGAATTCCTTTCCATTGCCTTCGTTGAGC
ACCAACGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGT
GCTTTCGACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATA
CAAAGTCAAGGAGATAAAAAATGGGCGTTTGGCATTGCTGGCATTTGTGG
GTTTCTGCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAAC
TTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTAT
TATCCCCAGAGGGATTGTGCCTTGAAGAATTGCATTGTTAAATTATCCAA
TCCACTGTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGT
ATCTTTCTGACTGTAAGATTAGAAAGTAATTGTCCTCCAATGACGTTCAT
GCTAGAATCTAATACTATTGTGATTGCCAT
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