DY262462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.878e-27 Identity = 78/190 (41.05%), Postives = 97/190 (51.05%), Query Frame = 3 Query: 153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 P YL G PGD+G+D L PE +RY+E ELIH RWAML G PE L G W +A GG YLG P V + ++ + + +E R + YPG +FDPLG + DP F E KVKEIKNGRLA + GF V Q+ G GP++NL HLA+P NN Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNLDDHLANPTVNN 241
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.204e-27 Identity = 79/196 (40.31%), Postives = 100/196 (51.02%), Query Frame = 3 Query: 144 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 E P YL G PGD+G+D + PE + +E E+IHCRWAML G + PE L G W +A GG Y G P + ++ I + + + +E R DP PGGAFDPLG + DP+ E KVKEIKNGRLA+ + GF V Q+ G GP+ENL HLADP NN Sbjct: 64 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGG-LDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 254
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.185e-27 Identity = 90/246 (36.59%), Postives = 120/246 (48.78%), Query Frame = 3 Query: 39 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR----------------SMEK------DPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 S +S S ++ + V A+ + A W + YLDG PGDFGFDPL L + PE + E E+I+ R+AML G + PE LG + Q A G GT W T+ V+E + F EH+R +EK DP YPGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q+ G GP +NL HLADP +NN Sbjct: 25 SRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNLLDHLADPVNNN 265
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 7.138e-27 Identity = 85/226 (37.61%), Postives = 111/226 (49.12%), Query Frame = 3 Query: 81 SLPAAANATSKYAMSAD----------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ---AQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 S A A SK + SA+ W P G PGD+G+D L PE +RY+E ELIH R +L G++ PE L + ++ A W A G YLG P + + L ++ + + VE R + P + YPG AFDPLG + DP F E KVKEIKNGRLA+ A +GF V Q+ G GP+ENL HLA+P NN Sbjct: 39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR-VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAIVTGKGPIENLTDHLANPAENN 262
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.218e-26 Identity = 80/199 (40.20%), Postives = 104/199 (52.26%), Query Frame = 3 Query: 135 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 + G P P YL G PGD+G+D L PE + +E E+IHCRWA+ G + PE L G G W +A GG ++ G P V ++ I + + + VE DP Y GG+FDPLG DP++F E KVKEIKNGRLA+ + GF V Q+ G GP+ENLA HL DP +NN Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGG-LSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLTDPVNNN 252
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.218e-26 Identity = 92/247 (37.25%), Postives = 120/247 (48.58%), Query Frame = 3 Query: 69 FTAVSLPAAANATSKYAMSADWMP-----GEPRP---------PYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALG-LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 F A SLP++ + K + A P G RP YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G + PE LG +G Q A G GT W T+ V+E + F EH+R SM K YPGG F +PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q G GP +NL H+ADP +NN Sbjct: 23 FRARSLPSSVGCSRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 118.242 bits (295), Expect = 6.043e-26 Identity = 88/257 (34.24%), Postives = 121/257 (47.08%), Query Frame = 3 Query: 24 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN-------------------------------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 656 TTA ++ K T+ + KY A W+P RP +LDGS PGD GFDPL L + V EN L R++E ELIH RWAMLA G LV EA +WV+A V A+Y G +P+ ++ ++ IE + + E R+ E +PEK+ YPGG FDPL S+D ++ K EIK+ RLA+++F G+ V Q+ G G L +LA Sbjct: 17 TTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA---GKVELDGASYAGLSLPF-SITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGV-QALSTGEGALGSLA 268
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.346e-25 Identity = 81/191 (42.41%), Postives = 98/191 (51.31%), Query Frame = 3 Query: 153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 P YL+G PGD+G+D L PE R + E+IH RWAML G + PE L V+ +E W G YLG P V ++ +L + L + VE R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLFDHLDDPVANN 256
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.331e-24 Identity = 83/223 (37.22%), Postives = 106/223 (47.53%), Query Frame = 3 Query: 96 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 A ++++ MS D G R P YL+G PGD+G+D L PE + + E+IH RWAML G + PE L WV+ V G YLG P V ++ +L + + + VE R YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN Sbjct: 34 AMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLE--KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.807e-23 Identity = 77/193 (39.90%), Postives = 96/193 (49.74%), Query Frame = 3 Query: 153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686 P YL G G L PE + +E E+IH RWAML G + PE L G W +A GG YLG P + ++ I + + + VE R DP YPGG+FDPLG + DP+ E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 65 PSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 244 The following BLAST results are available for this feature:
BLAST of DY262462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262462 ID=DY262462; Name=DY262462; organism=Citrus clementina; type=EST; length=880bpback to top |