DY262462

Overview
NameDY262462
Unique NameDY262462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12772 contig Ccv1_Contig12772:349..1217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.955e-20
Identity = 83/232 (35.78%), Postives = 110/232 (47.41%), Query Frame = 3
Query:   51 SSKSKFFTAVSLPAAANATSKY--------AMSADWMPGEPR------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK----------------------YPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 605
            SS+S  F    + A  + TS+         A    W+P          P +LDGS PGDFGFDPL LG+ P  L+ Y+E+ELIH RWAMLAV GI V +A     W +A    A PG  A     P  +GTL   L  + L + +VE +R ++  DP+ +                       YPGG  FDPL          ++ D  K E  K+ EIK+ RLA+LA + F
Sbjct:   25 SSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEA---GADPGAVA-----PFSFGTL---LGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.104e-19
Identity = 69/185 (37.30%), Postives = 86/185 (46.49%), Query Frame = 3
Query:  132 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            W P    P +L+G   GD GFDP  L   P+  ER + +E+ H R AMLAV G LVP+ LG G W +A + A +                L  + +       F   +   E       YPG  FDPL  + D       K  EIKNGRLAL A +GF VQ+    G+ PL NLA HL  P   N
Sbjct:    5 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLAEHLQQPLQRN 166          

HSP 2 Score: 91.2781 bits (225), Expect = 7.911e-18
Identity = 67/189 (35.45%), Postives = 88/189 (46.56%), Query Frame = 3
Query:  132 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 674
            W P    P  L G  P D GFDPL L   P+   R + +E+ H R AML   G +VPE LG G W +A +  +V G                  L + F+++A     E+ R     + +K    + YPG  FDPL  + D       +  E+KNGRLAL A  G   Q  A  G  PL NL+ HLA+P
Sbjct:  190 WFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TGESPLANLSAHLANP 350          

HSP 3 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 72/204 (35.29%), Postives = 90/204 (44.12%), Query Frame = 3
Query:   87 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 653
            P  AN T+  AM A          W P    P YL G A GD GFDP  L   P   ER + +E+ HCR +MLA+ G LVPE LG G W Q   W  V   +                 V+    +A +E+ R        +++   + YPG  FDPL  +      E  K  EIKNGRLA+    G  V QS   G  P+ NL
Sbjct:  350 PIGANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWFQI--WDKVDFNR---------------FAVVALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEIKNGRLAMNGMFGLEV-QSHVTGKSPINNL 528          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.104e-19
Identity = 82/237 (34.60%), Postives = 111/237 (46.84%), Query Frame = 3
Query:   18 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYA--MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-----GLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME---KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            I T  F  +  ++KSK  ++       +   KY    S +W      P YL G  PGD+G+D   L   PE   + +E E+IH R AM A  G + PE L     G G   W +A       GG   YLG P  V   ++  I   + + +  VE  R       +     YP G+FD LG ++D + F E KVKE+KNGRLA+ +  GF V Q+       LENLA HL    +NN
Sbjct:   34 IVTAGFTMLKHAAKSKVSSST-----CDRRVKYLGPFSGEW------PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFV-QAIVSRKDRLENLADHLGWTVNNN 256          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.155e-19
Identity = 72/201 (35.82%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   87 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 674
            P A  AT+ +     W PG   P +L G  P D GFDPL +   P    R + SE+ H R +MLA+ G +VPE LG G W +              +G  V    L  IL+      A  E+ R     + +K    + YPG  FDPL  + D      Y  +EIKNGRLA+   +G   Q  A  G  PL NLA H A+P
Sbjct:  148 PVAMFATTGHKDGV-WFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGKGAWFE--------------VGNSVDGIKLGFILM---AIAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTD------YTKREIKNGRLAMTGLLGLTFQYLA-TGESPLANLAAHFANP 321          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.220e-18
Identity = 71/184 (38.59%), Postives = 94/184 (51.09%), Query Frame = 3
Query:  153 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK----------------------YPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 605
            P +LDGS PGD+GFDPL LG+ P  L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +GTL   L  + + + +VE +R ++  DP+ +                       YPGG  FDPL          +  D +K E  KV EIK+ RLA+LA + F
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGTL---LGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.719e-18
Identity = 82/251 (32.67%), Postives = 115/251 (45.82%), Query Frame = 3
Query:   18 IATTAFPSVLSSSKSKFFTA---------VSLPAAANATSKYAMSA-------DWMPGEPR------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME----------------KDPE-------KKKYPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 605
            + TT+  +VL+   S F T            + A      ++ ++A        W+P          P +LDGS PGDFGFDPL LG+ P  L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L + +VE +R ++                K  E       ++ YPGG  FDPL          +  D +K E  K+ EIK+ RLA+LA + F
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  489 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 104          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  489 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  489 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.127e-17
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  489 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of DY262462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB4_SPIOL4.955e-2035.78Chlorophyll a-b binding protein CP24, chloroplasti... [more]
LH18_EUGGR1.104e-1937.30Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_MALDO1.104e-1934.60Chlorophyll a-b binding protein AB10, chloroplasti... [more]
LH15_EUGGR7.155e-1935.82Light-harvesting complex I LH35 proteins (Fragment... [more]
CB4A_SOLLC1.220e-1838.59Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.719e-1832.67Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2D_SOLLC3.006e-1765.15Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.006e-1765.15Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.006e-1765.15Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC5.127e-1763.64Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262462 ID=DY262462; Name=DY262462; organism=Citrus clementina; type=EST; length=880bp
CTCTGATGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCA
TCTTCTAAATCCAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAA
TGCAACCTCGAAATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCC
GGCCGCCTTATCTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCA
CTTCGGCTTGGCGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGA
ACTCATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGC
CAGAGGCATTGGGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCA
GTTCCTGGAGGACAAGCCACATACTTAGGCACCCCTGTTCCATGGGGCAC
TCTCCCCACAATTTTGGTCATTGAATTCCTTTCCATTGCCTTCGTTGAGC
ACCAACGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGT
GCTTTCGACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATA
CAAAGTCAAGGAGATAAAAAATGGGCGTTTGGCATTGCTGGCATTTGTGG
GTTTCTGCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAAC
TTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTAT
TATCCCCAGAGGGATTGTGCCTTGAAGAATTGCATTGTTAAATTATCCAA
TCCACTGTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGT
ATCTTTCTGACTGTAAGATTAGAAAGTAATTGTCCTCCAATGACGTTCAT
GCTAGAATCTAATACTATTGTGATTGCCAT
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