DY262462

Overview
NameDY262462
Unique NameDY262462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12772 contig Ccv1_Contig12772:349..1217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.127e-17
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  489 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  372 YLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            YLG P  V   ++  I   + + +  VE  R     P    E   YPGG+FDPL    DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 112          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 54/145 (37.24%), Postives = 71/145 (48.97%), Query Frame = 3
Query:  144 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKF 542
            E  P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLG P  V   ++  I   + + +  VE  R       +   + YPGGAFDPLG ++DP+ F
Sbjct:   62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGG-LDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.111e-14
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  489 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            YPG AFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:   74 YPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 138          
BLAST of DY262462 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  399 TLPTILVIEFLSIAFVEHQRSMEKDPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 686
            +L  IL  + L +  VE  R+    P +      + YPGG FDPLG + DP  F E KVKEIKNGRLA+   +GF   Q+   G GP+EN   HL DP  +N
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF-YAQAIVTGEGPVENWLYHLQDPSAHN 110          
The following BLAST results are available for this feature:
BLAST of DY262462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB2E_SOLLC5.127e-1763.64Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA2.545e-1647.75Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_SILPR3.675e-1537.24Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PINSY3.111e-1460.61Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_EUGGR2.016e-1344.12Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262462 ID=DY262462; Name=DY262462; organism=Citrus clementina; type=EST; length=880bp
CTCTGATGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCA
TCTTCTAAATCCAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAA
TGCAACCTCGAAATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCC
GGCCGCCTTATCTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCA
CTTCGGCTTGGCGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGA
ACTCATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGC
CAGAGGCATTGGGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCA
GTTCCTGGAGGACAAGCCACATACTTAGGCACCCCTGTTCCATGGGGCAC
TCTCCCCACAATTTTGGTCATTGAATTCCTTTCCATTGCCTTCGTTGAGC
ACCAACGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGT
GCTTTCGACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATA
CAAAGTCAAGGAGATAAAAAATGGGCGTTTGGCATTGCTGGCATTTGTGG
GTTTCTGCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAAC
TTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTAT
TATCCCCAGAGGGATTGTGCCTTGAAGAATTGCATTGTTAAATTATCCAA
TCCACTGTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGT
ATCTTTCTGACTGTAAGATTAGAAAGTAATTGTCCTCCAATGACGTTCAT
GCTAGAATCTAATACTATTGTGATTGCCAT
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