A database of simple sequence repeats (SSR) marker based DNA profiles of Citrus and related cultivars and germplasm

Publication Overview
TitleA database of simple sequence repeats (SSR) marker based DNA profiles of Citrus and related cultivars and germplasm
AuthorsHong JH, Chae CW, Choi KJ, Kwon YS
TypeJournal Article
Journal NameKorean Journal of Horticultural Science and Technology
Volume34
Issue1
Year2016
Page(s)142-153
CitationHong JH, Chae CW, Choi KJ, Kwon YS. A database of simple sequence repeats (SSR) marker based DNA profiles of Citrus and related cultivars and germplasm. Korean Journal of Horticultural Science and Technology. 2016; 34(1):142-153.

Abstract

The present study investigated identification of cultivars through phylogenetic analysis of 108 Citrus varieties and related cultivars using simple sequence repeat (SSR) markers. Two hundred three SSR primer pairs were used to detect polymorphic markers among 8 Citrus cultivars consisting of 4 mandarins, 1 orange, 1 tangor, 1 tangelo, and 1 pumelo. Eighteen SSR primer pairs were reproducible and showed highly polymorphic alleles. These markers were applied to assess genetic variations of the 108 varieties. Each marker detected 5-14 alleles, with an average of 9.28. The polymorphism information content varied from 0.417 to 0.791 with an average of 0.706. Cluster analysis with SSR markers resulted in 13 major groups reflecting cultivar types and pedigree information. Twelve orange cultivars in the I-1st sub-cluster and 23 mandarin cultivars in the II-1st sub-cluster, respectively, were not discriminated using the SSR markers. This could be due to narrow genetic backgrounds originated through bud mutation or nucellars seedlings. The SSR profile database of Citrus cultivars will be useful as a tool for protection of plant breeders' intellectual property rights in addition to assessing genetic diversity in Citrus cultivars and germplasms.
Features
This publication contains information about 18 features:
Feature NameUniquenameType
TAA15ATAA15Agenetic_marker
CAT01CAT01genetic_marker
AG14AG14genetic_marker
TC26TC26genetic_marker
CiBE1644CiBE1644genetic_marker
CiBE2165CiBE2165genetic_marker
CiBE2285CiBE2285genetic_marker
CiBE2493CiBE2493genetic_marker
CiBE3397CiBE3397genetic_marker
CiBE4039CiBE4039genetic_marker
CiBE4825CiBE4825genetic_marker
CiBE5866CiBE5866genetic_marker
CCSMEc8CCSMEc8genetic_marker
CCSME17CCSME17genetic_marker
CCSME24CCSME24genetic_marker
CCSME28CCSME28genetic_marker
CCSME50CCSME50genetic_marker
CCSM147CCSM147genetic_marker
Stocks
This publication contains information about 107 stocks:
Stock NameUniquenameType
MurcottMurcottaccession
Tamdo IhoTamdo Ihoaccession
LisbonLisbonaccession
Allen-Newman EurekaAllen-Newman Eurekaaccession
BanpeiyuBanpeiyuaccession
TadanishikiTadanishikiaccession
MacrophyllaMacrophyllaaccession
IchangIchangaccession
Golden SpecialGolden Specialaccession
Fingered CitronFingered Citronaccession
GamjaGamjaaccession
DangyoojaDangyoojaaccession
DongjungkyoolDongjungkyoolaccession
BungkyoolBungkyoolaccession
BinkyoolBinkyoolaccession
SadoogamSadoogamaccession
JinkyoolJinkyoolaccession
CheongkyoolCheongkyoolaccession
PunkyoolPunkyoolaccession
HongkyoolHongkyoolaccession
Trifoliate orangeTrifoliate orangeaccession
flying dragonflying dragonaccession
SwingleSwingleaccession
SeolbongmiSeolbongmiaccession
SinyeogamSinyeogamaccession

Pages

Properties
Additional details for this publication include:
Property NameValue
URLhttps://www.cabdirect.org/cabdirect/abstract/20163122629