EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata

Publication Overview
TitleEST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata
AuthorsChen C, Bowman KD, Choi YA, Dang PM, Rao MN, Huang S, Soneji JR, McCollum TG, Gmitter FGJ
TypeJournal Article
Journal NameTree genetics & genomes
Volume4
Issue1
Year2008
Page(s)1-10
CitationChen C, Bowman KD, Choi YA, Dang PM, Rao MN, Huang S, Soneji JR, McCollum TG, Gmitter FGJ. EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata. Tree genetics & genomes. 2008; 4(1):1-10.

Abstract

The segregation of 141 polymorphic expressed sequence tag-simple sequence repeat (EST-SSR) markers in an F1 intergeneric citrus population was studied to build the first extensive EST maps for the maternal sweet orange and paternal Poncirus genomes. Of these markers, 122 were found segregating in sweet orange, 59 in Poncirus, and 40 in both. Eleven linkage groups with 113 markers in sweet orange, 8 with 45 markers in Poncirus, and 13 with 123 markers in the cross pollinator (CP) consensus of both, were constructed. About 775.8 cM of sweet orange genome and 425.7 cM of Poncirus genome were covered. Through comparison of shared markers, three cases were found where two linkage groups in one map apparently were colinear with one group of the other map; Poncirus linkages Ar1a and Ar1b and consensus linkages CP1a and CP1b, were both collinear with one sweet orange linkage, Sa1, as were sweet orange Sa3a and Sa3b with Poncirus Ar3 and consensus CP3, and sweet orange Sa7a and Sa7b, and consensus CP7a and CP7b with Poncirus Ar7. These EST-SSR markers are particularly useful for constructing comparative framework maps for related genera because they amplify orthologous genes to provide anchor points across taxa. All SSR primers are freely available to the citrus community.
Features
This publication contains information about 126 features:
Feature NameUniquenameType
CX4F77CX4F77genetic_marker
CX4F87CX4F87genetic_marker
CX5007CX5007genetic_marker
CX5015CX5015genetic_marker
CX5018CX5018genetic_marker
CX5022CX5022genetic_marker
CX5033CX5033genetic_marker
CX5039CX5039genetic_marker
CX5F38CX5F38genetic_marker
CX5F39CX5F39genetic_marker
CX5F40CX5F40genetic_marker
CX5F41CX5F41genetic_marker
CX5F42CX5F42genetic_marker
CX5F46CX5F46genetic_marker
CX5F51CX5F51genetic_marker
CX6002CX6002genetic_marker
CX6016CX6016genetic_marker
CX6026CX6026genetic_marker
CX6035CX6035genetic_marker
CX6037CX6037genetic_marker
CX6F04CX6F04genetic_marker
CX6F13CX6F13genetic_marker
CX6F15CX6F15genetic_marker
CX6F16CX6F16genetic_marker
CX6F27CX6F27genetic_marker

Pages

Featuremaps
This publication contains information about 3 maps:
Map Name
Citrus-Sanford/Argentina-F1
Citrus-Sanford/Argentina-Argentina-F1
Citrus-Sanford/Argentina-Sanford-F1
Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
SanfordSanfordaccession
FiwickeFiwickeaccession
RubyRubyaccession
ArgentinaArgentinaaccession
Sanford_x_ArgentinaSanford_x_Argentinapopulation
Fiwicke_x_ArgentinaFiwicke_x_Argentinapopulation
Ruby_x_ArgentinaRuby_x_Argentinapopulation
Properties
Additional details for this publication include:
Property NameValue
Publication TypeJournal Article
Publication Date2008
Published Location|||
Language Abbreng
Publication Model[electronic resource].
URLhttp://dx.doi.org/10.1007/s11295-007-0083-3
KeywordsCitroncirus webberi, microsatellite repeats, expressed sequence tags, chromosome mapping, Citrus sinensis, Poncirus trifoliata, population genetics, genomics, citrus fruits, hybrids, genotype, DNA primers, genome, linkage (genetics), genetic polymorphism, genotyping