DY270325

Overview
NameDY270325
Unique NameDY270325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3572 contig Ccv1_Contig3572:1..1261. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.102e-39
Identity = 75/83 (90.36%), Postives = 81/83 (97.59%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 289
            MGKGTGSFGKRRNK+  LCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.043e-38
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 289
            MGKGTGSFGKRRNK+  LCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQ
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.779e-38
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 289
            M KGTGSFGKRRNK+  LCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.392e-29
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 289
            M KGT SFGKR NKT  LC RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKTTGTGRM++L+ V RRF++GFREGTQ
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQ 83          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae GN=RPL37A PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 9.785e-29
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            MGKGT SFGKR NK+  LC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.180e-28
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 283
            M KGT SFGKRRNKT  LC RCGR S+H+QKS+CA C YPAA+ R+Y+WSVKA RRKTTGTGRMR+L+ V RRF++GF+EG
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEG 81          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37B_YEAST (60S ribosomal protein L37-B OS=Saccharomyces cerevisiae GN=RPL37B PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 6.342e-28
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            MGKGT SFGKR NK+  LC RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_RAT (60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.413e-27
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT SFGKRRNKT  LC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_MOUSE (60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 1.413e-27
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT SFGKRRNKT  LC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_HUMAN (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.413e-27
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT SFGKRRNKT  LC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
The following BLAST results are available for this feature:
BLAST of DY270325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL373_ARATH2.102e-3990.3660S ribosomal protein L37-3 OS=Arabidopsis thalian... [more]
RL371_ARATH1.043e-3890.3660S ribosomal protein L37-1 OS=Arabidopsis thalian... [more]
RL372_ARATH1.779e-3889.1660S ribosomal protein L37-2 OS=Arabidopsis thalian... [more]
RL371_DROME4.392e-2972.29Probable 60S ribosomal protein L37-A OS=Drosophila... [more]
RL37A_YEAST9.785e-2969.5160S ribosomal protein L37-A OS=Saccharomyces cerev... [more]
RL37_SPOFR2.180e-2871.6060S ribosomal protein L37 OS=Spodoptera frugiperda... [more]
RL37B_YEAST6.342e-2867.0760S ribosomal protein L37-B OS=Saccharomyces cerev... [more]
RL37_RAT1.413e-2770.7360S ribosomal protein L37 OS=Rattus norvegicus GN=... [more]
RL37_MOUSE1.413e-2770.7360S ribosomal protein L37 OS=Mus musculus GN=Rpl37... [more]
RL37_HUMAN1.413e-2770.7360S ribosomal protein L37 OS=Homo sapiens GN=RPL37... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YE10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270325 ID=DY270325; Name=DY270325; organism=Citrus clementina; type=EST; length=1261bp
CACTCATCAGACCGCTTTCCTCTACTTCGCATACGCTTCAATGGGTAAGG
GCACAGGGAGTTTTGGTAAGAGGAGAAACAAGACGCTTTTTTTGTGTGTG
CGATGTGGCCGTCGCAGCTTCCATCTTCAGAAGAGTCGTTGCGCTGCTTG
TGCTTACCCCGCTGCTCGCAAGAGAACGTATAACTGGAGTGTGAAGGCAA
TCCGAAGAAAGACCACTGGAACCGGCAGGATGAGGTATCTGCGCCATGTC
CCTCGCAGGTTCAAGAGCGGCTTCAGAGAAGGTACTCAGGCAGCACCAAG
GAAGAAGGGAGCATCTGCCTCTGCTTAAGGAGTTGAAGGGTAATTTTGGG
CGTGAATCAGCATCTCATTATAGATTCAGTCTTCTTTAATGGGTGGAGAC
CAGATTCATGGGAACGTAATTCTTTAAATAGGATGTTATTTATTTTTGTG
CTTAATTGTTTTCTATGTTTGTTTACATGCATCCCTATTCCCACTGAGAA
GACACGTCCAGCTTCTTACCGTCGGTAGTACCCCCCACAGAACCTCAAAT
TCCACCCAAAATCCCCGAATTACTAAAACATTCCTTCCCTCGTGAGATCT
CCTTTCAATATGACCACCACCAAGCCGTATGACTTAACTACCGAGAACTA
CCTATAAACAGTATAAGAAATTTCGCAAAGACAGAAAGACCCTACTGGCG
CCCAACCTCCGTCCCCCAATCCAGTCACTCGAGTCGCCCGGATATCCAAT
ATCATAGACGTGGCTTACTTTCTACAAATGAGCTTGATACATACCGATGG
ACGCCAGTACAACAAAGCCACGTCCGCCCTCCCTACACCCTCCGAACATA
GTCTTTTATACCTCTAACATACCCCTCCCCCCCAATTCAATATCTCTTTT
ATCCTTATATAACATAAATATATTTAATATTTAAAAAATCGTCGAGAGAT
CATAATAATCCAAGTGACACCACAACACACTCCACTCGAGCAGTTCTCAG
GTTAGTTCGACTTATTGGAGTCTCAGAATTAGATTAACGACCTCCAGACT
TACGCGCACTACCCTCTGCTGACACTCCAAACTTATCACCATAAGGTAAA
TCTACTGAACAAGGCATGATGTCAGTGCGCAATTTTGACCTGAGTATATA
GGACGTGTAGTGATCAGTGGAGGTAGGAGTAGGACCAGACATAACAGACC
TCTAAGCGAAGCAAGGCATGTAGACAATTCACATCGAGAGTACAAGCTGA
TAGCTATTGGG
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