DY270336

Overview
NameDY270336
Unique NameDY270336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1024
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270336_ssr156 microsatellite DY270336_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY270336 vs. ExPASy Swiss-Prot
Match: RBM25_MOUSE (RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.169e-18
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 3 
Query:  399 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSRTQDPVKGLPMLKLLQTILNHEP*MFVLKMWRKPLFEIQKVKNG 824
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S+         +L  +  +L+ E  +F++KMWR  ++E +  K G
Sbjct:  698 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIG 838
[Close]
BLAST of DY270336 vs. ExPASy Swiss-Prot
Match: RBM25_HUMAN (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.169e-18
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 3 
Query:  399 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSRTQDPVKGLPMLKLLQTILNHEP*MFVLKMWRKPLFEIQKVKNG 824
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S+         +L  +  +L+ E  +F++KMWR  ++E +  K G
Sbjct:  700 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIG 840
The following BLAST results are available for this feature:
BLAST of DY270336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM25_MOUSE1.169e-1835.66RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE... [more]
RBM25_HUMAN1.169e-1835.66RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YE24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270336 ID=DY270336; Name=DY270336; organism=Citrus clementina; type=EST; length=1024bp
CGTCTTCACAAACTTTTAATGGGGATGAATCAACCAATGTGCCGATAGCT
GCATCAGATATGAGGCAGAGTGGCAATGTGCCAGCAAGAAAGTTGGGGTT
TGGTCTTGTTGGCTCTGGAAAACGTACAGCTGTCCCTTCTGTTTTCCATG
TTGAGGATGATGATGATGCCGACAAGGATAAAAAGATGAGGCCGTTGGTT
CCCATTGATTACTCAACTGAGGAACTGCAGGCAGCCCAACCTCATGTCTC
TGGGGCAAACCCTCCGAATTTGGCTGCAGCAGCAGAATTTGCGAAGCGTA
TTTCAAATGTTAATTCCAAAGAAGAGAAATCTGATGCAGAAAGAGAAAGA
AGTAGACGCTTGCACGATAGGTCAAGCCAGAGGGAGAAGGACCGGAGTGA
TGAGGATAATAATCGCACCAGAGATGAGCACAAAGAGAAGATTCTTGACA
GGGACAGAGATCGGGAACATGGTTTGGATAAAGTGAAGACGCCAGATAAC
AAGAAACTTTTGGATGCAAAACAATTGATTGATATGATCCCTAAGACAAA
GGAGGAGTTGTTCTCATATGAGATAAATTGGGCCGTGTACGACAAGCATG
AGCTGCATGAGAGAATGAGACCGTGGATTTCAAAGAAGATTACAGAGTTT
CTCGGAGAAGAAGAAACTACTTTGGTAGACTATATTGTATCCCGTACTCA
AGACCCTGTGAAGGGCCTCCCAATGTTGAAGTTGCTACAAACTATTTTAA
ACCATGAACCTTAAATGTTTGTCCTTAAGATGTGGAGGAAGCCCCTCTTT
GAAATCCAGAAGGTTAAAAACGGTTCTGGCTTTTAAAACCAAAATCTAAA
TGGGACCGCTAACCCCCCCTTGAAAAACCAAAAAATATAACTTGCATTGG
AAACAAAAACCCAAATTGGAATCTGGTTTTTTGTTTTGTTCTTCCTATTT
CCAAGGCGCAATCCCTTGCCCATGGAATCCCTTAAACAAATAAACCCCTT
TTTTTTAAGCCCCCCCCCCCCGGG
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