DY270338

Overview
NameDY270338
Unique NameDY270338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1176
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15121 contig Ccv1_Contig15121:13..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY270338 vs. ExPASy Swiss-Prot
Match: HT1_ARATH (Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.222e-14
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:  346 KWLVDPKLLFVGPKIGEGAHAKVYEGKYKNQNVAIKIVNRGETPEEI-AKREARFAREVAMMSRVRHRNLVKFIGACKE-PVMVIVTEXXXXXXXXXXXXNMRPRCLDIHVAIGFA 687
            +W  D   LF+G K   GAH+++Y G YK + VA+K+V      EE  AK E +F  EVA++SR+ H N+V+FI ACK+ PV  I+TE               P  L I   +  A
Sbjct:   78 EWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTHKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSIETVLRLA 193
The following BLAST results are available for this feature:
BLAST of DY270338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HT1_ARATH6.222e-1438.79Serine/threonine-protein kinase HT1 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YF02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270338 ID=DY270338; Name=DY270338; organism=Citrus clementina; type=EST; length=1176bp
GAAAAACCAACATTTGTCTGCAAGCTGCAACAATAAACGCGTTGCCTTTA
ATTTAATTCATCCATTCAAATCTCCTACAAATCCACCATCACTCTGTTTC
TTGACTATCTTGCTGAGTTTTAATTTCCCAGTTGGTTAAATTCTTTAAAA
ACGTCGTTTGTTAATTACTTTGGATCTGTTACTGAATGTGGGGTGGCCTT
TTTCAGTCATGTATTTTTCGTTTTTGTTTAGATGAGTGAGATGATTTGGT
GAATTTTGTTTCTTGTATTTTGATGAGTTGAAAATAAAATAAATATGGGA
TCTGCAAATGGGTTCTTTTCAGCCGGAGAGTTTAGTTTAGACTCCAAGTG
GCTTGTTGATCCAAAGCTTCTTTTTGTTGGTCCAAAGATTGGAGAAGGAG
CTCATGCTAAAGTTTATGAGGGAAAATATAAGAATCAAAATGTTGCTATT
AAAATTGTCAATAGAGGGGAAACCCCTGAAGAAATTGCAAAGAGAGAAGC
ACGGTTTGCAAGAGAGGTTGCTATGATGTCCAGAGTACGGCATAGAAATT
TAGTGAAGTTTATTGGTGCCTGCAAGGAGCCCGTCATGGTTATTGTGACG
GAGCTCTTATTGGGTGGTACGTTGCAAAAATATTTGCTGAATATGCGGCC
TAGGTGCTTGGACATACATGTGGCAATTGGTTTTGCCCCTTGATATTGCC
CCGTGCAAGGGAATGCCTACATTCCTCATGGAATCATTCCACCGTGAACT
AAAACCTGAAAATATTAATCTTGACCCCAGACCAAAAAACAGAAAAACTT
GCGGATTTTGGTTTACCCAAAAAAAATCCTTGGACGAAAAACAAGACTGC
CGAAACGGCCCCTCATCCGTGGGTTGGCTCCCCCAACACTACTACCCCTG
CCCCACTTTCAAAGAAGGGAAAAAAAACTTATACACCTCAATATAACAAA
ATACCTACCCCTTATATAATAACATTTGTACAAACCTACCCCGCTTCAAG
GTCGCCTTACCAAAGACACCTCCCATCCTTCACATCACCCTTGTAGCCCC
TTCCCCTTTTACAACCTACACATCTCCTACCCCTCATTTTCCCCCCTCCA
AGACTCTGTACCTTATTTTTCATTATACTCCTCGCTGGGTAACAAATTGT
CAACCACTTATCATTCCCACCATCCC
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