DY270349

Overview
NameDY270349
Unique NameDY270349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270349_ssr755 microsatellite DY270349_ssr755:755..766. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3582 contig Ccv1_Contig3582:1..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C03_ORYSJ (Probable protein phosphatase 2C 3 OS=Oryza sativa subsp. japonica GN=Os01g0513100 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 5.380e-43
Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 3
Query:    3 EDTLCRVVDIIPPDNTMXXXXXXXXXNNLRALLFRKKSLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSGLFTCAVCQIDLAPSEGISVHAGSFF-STSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C VVD+IPPD T+         N L++L+FRKK+ D  NKL+K+LSA G+VEELFEEGSAML+ERLGN+    +++S LFTCA+CQ+DL PSEGISVHAGS F S+SSKPW GPFLC+DC + KDAMEG R
Sbjct:  344 DDTTCIVVDMIPPDQTIRHPSPPKKINKLKSLIFRKKTKDHPNKLTKQLSAAGMVEELFEEGSAMLSERLGNDSSGRRTSSSLFTCAICQVDLEPSEGISVHAGSIFSSSSSKPWEGPFLCSDCRDKKDAMEGKR 478          
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C15_ARATH (Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana GN=At1g68410 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.487e-42
Identity = 92/138 (66.67%), Postives = 107/138 (77.54%), Query Frame = 3
Query:    3 EDTLCRVVDIIPPDNTMXXXXXXXXXNN--LRALLFRKKSLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSG--LFTCAVCQIDLAPSEGISVHAGSFFSTSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C VVDIIPP+N           +N   ++LLFRKKS +S+NKLSKKLS VGIVEELFEEGSAMLAERLG+ +   +ST+G  +FTCA+CQ+DLAPSEGISVHAGS FSTS KPW GPFLC DC + KDAMEG R
Sbjct:  293 DDTTCIVVDIIPPENFQEPPPSPPKKHNNFFKSLLFRKKS-NSSNKLSKKLSTVGIVEELFEEGSAMLAERLGSGDCSKESTTGGGIFTCAICQLDLAPSEGISVHAGSIFSTSLKPWQGPFLCTDCRDKKDAMEGKR 429          
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C05_ARATH (Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.421e-29
Identity = 68/134 (50.75%), Postives = 87/134 (64.93%), Query Frame = 3
Query:    3 EDTLCRVVDIIPPDNTMXXXXXXXXXNNLRALLFRKKSLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSGLFTCAVCQIDLAPSEGISVHAGSFFSTSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C VVDI+P  +           N   + L RK  +D+ NK   KLSAVG+VEELFEEGSA+LA+RLG ++ +  + +GL  CAVCQID +PSE +S + GS  S++SK W GPFLC  C   KDAMEG R
Sbjct:  288 DDTTCVVVDIVPSGHLSLAPAPMKKQNPFTSFLSRKNHMDTNNKNGNKLSAVGVVEELFEEGSAVLADRLG-KDLLSNTETGLLKCAVCQIDESPSEDLSSNGGSIISSASKRWEGPFLCTICKKKKDAMEGKR 420          
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C12_ARATH (Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.805e-26
Identity = 60/135 (44.44%), Postives = 84/135 (62.22%), Query Frame = 3
Query:    3 EDTLCRVVDIIPPDN-TMXXXXXXXXXNNLRALLFRKKSLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSGLFTCAVCQIDLAPSEGISVHAGSFFSTSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C VVDI+P +               +   +F++K+ DS++ + K+ +   +VEELFEEGSAML+ERL  + P+      LF CAVCQ+++ P EG+S+HAGS      +PW GPFLCA C + KDAMEG R
Sbjct:  284 DDTTCIVVDILPLEKPAASVPPPKKQGKGMLKSMFKRKTSDSSSNIEKEYAEPDVVEELFEEGSAMLSERLDTKYPLCNMFK-LFMCAVCQVEVKPGEGVSIHAGSDNCRKLRPWDGPFLCASCQDKKDAMEGKR 417          
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C33_ORYSJ (Probable protein phosphatase 2C 33 OS=Oryza sativa subsp. japonica GN=Os03g0301700 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.922e-24
Identity = 66/137 (48.18%), Postives = 82/137 (59.85%), Query Frame = 3
Query:    3 EDTLCRVVDIIPPDN--TMXXXXXXXXXNNLRALLFRKKSLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSGLFTCAVCQIDLAPSEG-ISVHAGSFFSTSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C VVDIIP D+  T          N LR+LLF ++S  S  KL  K ++   VEELFEEGSAML ERLG   P  ++ S    CA+CQ+D AP E  ++ + G   S  S PW GP+LC+DC   KDAMEG R
Sbjct:  289 DDTTCVVVDIIPSDHSSTPPSLSPKKNQNKLRSLLFGRRSHSSVGKLGNKSASFDSVEELFEEGSAMLDERLGRNFP-SKANSSPSRCAICQVDQAPFEDLVTDNGGGCCSAPSTPWVGPYLCSDCRKKKDAMEGKR 424          
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C15_ORYSJ (Probable protein phosphatase 2C 15 OS=Oryza sativa subsp. japonica GN=Os02g0567200 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.399e-20
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 3
Query:    3 EDTLCRVVDIIPP--DNTMXXXXXXXXXNNLRALLFRKKSLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSGLFTCAVCQIDLAPSEGISVHAGSFFSTSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C VVDI+P   + TM            + +  +K   DS++   ++     IVEE+FE+G A L++RL +E PV ++   LF CA+CQ++L PS+GISVH  S    + + W GPFLC  C   K+AMEG R
Sbjct:  294 DDTTCIVVDILPDKANLTMPHTKKQPGMGVFKNMFRKKTPSDSSSHTDREYMDPDIVEEIFEDGCAFLSKRLDSEYPV-RNMFKLFICAICQVELKPSQGISVHEDSSQPGNLRRWDGPFLCQGCQEKKEAMEGKR 428          
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C40_ORYSJ (Probable protein phosphatase 2C 40 OS=Oryza sativa subsp. japonica GN=Os04g0449400 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 7.075e-19
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 3
Query:    3 EDTLCRVVDIIPPDNTMXXXXXXXXXNN--LRALLFRKKSLDSANKLSK-KLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSGLFTCAVCQIDLAPSEGISVHAGSFFSTSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C V+DIIPP+                 + + ++K + DS     K + +   +VEE+FE+G   L+ RL +E PV ++   LF CA+CQ++L   +GIS+H G   S   +PW GPFLC  C   K+AMEG R
Sbjct:  312 DDTTCIVIDIIPPEKISPTVQPAKKAGKGLFKNIFYKKATSDSPCHADKDQCTQPDLVEEVFEDGCPSLSRRLDSEYPV-RNMFKLFICAICQVELESGQGISIHEGLSKSGKLRPWDGPFLCHSCQEKKEAMEGKR 447          
BLAST of DY270349 vs. ExPASy Swiss-Prot
Match: P2C69_ORYSJ (Probable protein phosphatase 2C 69 OS=Oryza sativa subsp. japonica GN=Os09g0459600 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.207e-18
Identity = 52/134 (38.81%), Postives = 74/134 (55.22%), Query Frame = 3
Query:    3 EDTLCRVVDIIPPDNTMXXXXXXXXXNNLRALLFRKKSLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEEPVVQSTSGLFTCAVCQIDLAPSEGISVHAGSFFSTSSKPWGGPFLCADCGNNKDAMEG*R 404
            +DT C VVDI+PP+              +   +FR+K  D +  L ++ +    VEE+F++GSAML++RL      +QS    F+CAVCQ+ L   +GISVH+        + W GPFLC  C   KDA+EG R
Sbjct:  285 DDTTCIVVDILPPEKLAPSPPTKRQGKIVFNNMFRRKHTDVSFILDREYAEPDEVEEIFDDGSAMLSKRLAAGY-ALQSMFEPFSCAVCQVQLKAGQGISVHSNPLQHEKLQGWQGPFLCQSCNEKKDAIEGKR 417          
The following BLAST results are available for this feature:
BLAST of DY270349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
P2C03_ORYSJ5.380e-4363.70Probable protein phosphatase 2C 3 OS=Oryza sativa ... [more]
P2C15_ARATH3.487e-4266.67Probable protein phosphatase 2C 15 OS=Arabidopsis ... [more]
P2C05_ARATH4.421e-2950.75Probable protein phosphatase 2C 5 OS=Arabidopsis t... [more]
P2C12_ARATH7.805e-2644.44Probable protein phosphatase 2C 12 OS=Arabidopsis ... [more]
P2C33_ORYSJ1.922e-2448.18Probable protein phosphatase 2C 33 OS=Oryza sativa... [more]
P2C15_ORYSJ6.399e-2040.44Probable protein phosphatase 2C 15 OS=Oryza sativa... [more]
P2C40_ORYSJ7.075e-1937.96Probable protein phosphatase 2C 40 OS=Oryza sativa... [more]
P2C69_ORYSJ1.207e-1838.81Probable protein phosphatase 2C 69 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YF15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270349 ID=DY270349; Name=DY270349; organism=Citrus clementina; type=EST; length=1269bp
AAGAAGATACCCTTTGCAGAGTTGTTGACATAATTCCTCCTGACAATACA
ATGCAGCCTCAGCCTCCTCCCAAAAAGCAGAATAATCTGAGAGCGCTGCT
ATTTAGGAAGAAGTCCCTTGATTCTGCAAATAAACTATCAAAGAAGCTTT
CAGCTGTAGGAATAGTTGAAGAACTGTTCGAAGAAGGCTCGGCGATGCTC
GCCGAAAGACTGGGTAATGAAGAACCTGTGGTGCAGTCAACATCTGGTCT
TTTTACATGTGCTGTATGCCAAATCGACCTTGCTCCGAGTGAGGGAATCT
CTGTTCATGCTGGTTCTTTCTTCTCCACTAGCTCAAAGCCGTGGGGAGGG
CCTTTCCTCTGCGCTGATTGCGGAAATAATAAGGATGCCATGGAAGGATA
ACGCTCCTTGTGGAGTTAAAATAGCAAATCCCCTTTATTGTTACCTCCTT
CCTCTTTCCCTACTTATTTACTATTGGTTTGTACCCCCATCAATCTAAAA
AGGATGAAGTATTTGAATGTTTCCTTTTTTGCATCTATTATTGGTATTTG
CTTGTTTAGATTCATCTGTTGCGCAAGTTCTAGTGGCACCTTTTACTACC
TCCCCAAACCCGACCCCCCTTCTGCCCGACTACTTGCTCTCCATACACAC
CATCCTTACCATCGTTAATATTAGTTTTGAGAACACGAGCAAATATGAAA
TATGCTTCTACATAACACGTCTTCTTGTGTACCTGAAAAATGGTTGAGTC
TTCATATTTATTTATTTTTATTGTTTTTTTAGATGAGTGTTAATTTTTTA
GTAATCATAATTTTATAACTTACTATCCCTTACTATTCCATTATAATATA
CAATGCCCCAATTCAGCAACCATCTCCATCCAACACTTCATTATATGATC
TTCACTCTTCTAACAATCTTCTACTTCAACTCAGATGCTTTTCAAGTCCC
TGATACGTCAAGCTTTAGTATTTCTTATGAATATACTTTTATAATCTTTT
TTAAATGATTTGTATAAATTATGACATATTATATAACAACAAAACAGTCA
ATGTCGTATCAGTATTATGAACAGAATTCTTTCATGTTATTGACTAAACC
CTCTTAATCTCTCAGATAAGTCCTTATTTTATCCATACGCCCTTATTCAC
TTTTCATGCGCCTATCCGATTAATTATTATAGACCATAAAAAATACCAGT
ACATACTTATCACTGGCAATATTTCGAACACATTAATGATAACAATAAAT
CAAATATGTAGATCTTAAT
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