DY270354

Overview
NameDY270354
Unique NameDY270354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1157
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270354_ssr1 microsatellite DY270354_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY270354 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 3.762e-48
Identity = 115/245 (46.94%), Postives = 147/245 (60.00%), Query Frame = 1
Query:  103 MTDYRLPSTMNLWT-DDNGSVMEAFMSS-DLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXXXXIKT----SSAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVGVSGTERLAKSGCDPARQGPVFRVQNLF*YRPPMGLVKLGSPE 819
            MTDYRL  TMNLWT DDN S+MEAFMSS D++ +WPP+ ++ +TA    T               FNQETLQQRLQ LIEG+ EGWTYAIFWQ S D+SG+S+LGWGD                +    S+ A+QE+RKKVLRELNSLISG   +P             WFFL+SMTQSF          L G+A+   + V VSG+++L+ SGC+ A+QG VF +  +       G+V++GS E
Sbjct:    1 MTDYRLQPTMNLWTTDDNASMMEAFMSSSDISTLWPPASTTTTTAT---TETTPTPAMEIPAQAGFNQETLQQRLQALIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQEYRKKVLRELNSLISGGV-APSDDAVDEEVTDTEWFFLVSMTQSF-----ACGAGLAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVEVGSTE 236          
BLAST of DY270354 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.314e-36
Identity = 100/253 (39.53%), Postives = 130/253 (51.38%), Query Frame = 1
Query:  103 MTDYRL----PSTMNLW-TDDNGSVMEAFMS--SDLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSS-------MLGWGDXXXXXXXXXXXXXXIKTSSAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVGVSGTERLAKSGCDPARQGPVFRVQNLF*YRPPMGLVKLGSPE 819
            +TDY L      T NLW TDD+ SVMEAF+   SD + ++PP         P    +              N++ LQQRLQ LIEG+ E WTYA+FWQSS  ++G         +LGWGD                 +SAAEQEHRK+V+RELNSLISG                  WFFL+SMTQSF          LPGQA+  +  + +SG+  LA S C+ ARQG ++ +Q +       G+V+LGS E
Sbjct:    8 VTDYHLNQSKTDTTNLWSTDDDASVMEAFIGGGSDHSSLFPP------LPPPPLPQV--------------NEDNLQQRLQALIEGANENWTYAVFWQSSHGFAGEDNNNNNTVLLGWGDGYYKGEEEKSRKKKSNPASAAEQEHRKRVIRELNSLISGGVGG-GDEAGDEEVTDTEWFFLVSMTQSF-----VKGTGLPGQAFSNSDTIWLSGSNALAGSSCERARQGQIYGLQTMVCVATENGVVELGSSE 234          
BLAST of DY270354 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.376e-28
Identity = 74/181 (40.88%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  292 FNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSS-----MLGWGDXXXXXXXXXXXXXXIKTSSAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVGVSGTERLAKSGCDPARQGPVFRVQNLF*YRPPMGLVKLGSPE 819
            FN++TLQQRLQ LIE + E WTYAIFWQ S D+  S+     +LGWGD                 ++ AEQEHRK+V+RELNSLISG                  WFFL+SMTQSF          LPG+++  +  + +SG+  L  SGC+ A QG ++ ++ +       G+V+LGS E
Sbjct:   47 FNEDTLQQRLQALIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEEDKEKKK--NNTNTAEQEHRKRVIRELNSLISGGI-GVSDESNDEEVTDTEWFFLVSMTQSF-----VNGVGLPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSE 219          
BLAST of DY270354 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.068e-18
Identity = 72/236 (30.51%), Postives = 106/236 (44.92%), Query Frame = 1
Query:  142 TDDNGSVMEAFMSSDLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSC-DYSGSSMLGWGDXXXXXXXXXXXXXXIK-----TSSAAEQEHRKKVLRELNSLISGS----TSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVGVSGTERLAKSGCDPARQGPVFRVQNLF*YRPPMGLVKLGSPE 819
            TDDN  ++EA ++SD +    P+  S  T                         TL +RL  ++ G+ E W+YAIFW+ S  D+SG ++L WGD              ++      SS  E+E R  V+RELN +ISG                      WFFL+SMT SF          L G+A+   +PV V+G++ +  SGCD A+QG    +Q +       G+++L S E
Sbjct:    4 TDDNLLMIEALLTSDPSPPLLPANLSLET-------------------------TLPKRLHAVLNGTHEPWSYAIFWKPSYDDFSGEAVLKWGDGVYTGGNEEKTRGRLRRKKTILSSPEEKERRSNVIRELNLMISGEAFPVVEDDVSDDDDVEVTDMEWFFLVSMTWSF-----GNGSGLAGKAFASYNPVLVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTE 209          
The following BLAST results are available for this feature:
BLAST of DY270354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RAP1_ARATH3.762e-4846.94Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH4.314e-3639.53Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH7.376e-2840.88Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH1.068e-1830.51Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270354 ID=DY270354; Name=DY270354; organism=Citrus clementina; type=EST; length=1157bp
CTCTCTCTCTCTCTTTCTTTCTCATCTCCTTAGCTTTACTTTCCTTCTCC
AGCTTGTAATCCCGCCCCCCGCACACAGATCATTCGGTAGTAGGTCAATG
TTATGACGGACTACCGGTTACCTTCAACGATGAATCTATGGACTGACGAT
AACGGCTCTGTAATGGAAGCTTTCATGAGCTCTGATTTGACCGGTATTTG
GCCACCTTCGCAGTCTTCTGCATCTACAGCCGACCCCATGAAGACTCACA
TCTCTTCTTCATCCCAACAACAGCAACAACAGCAACAATTCTTCAATCAA
GAAACACTCCAGCAACGTCTTCAGCAATTGATTGAAGGCTCTCGTGAGGG
CTGGACCTACGCCATATTCTGGCAATCCTCGTGCGATTACTCCGGCTCCT
CTATGTTAGGATGGGGCGATGGGTATTACAAAGGAGAAGGAGAGAAAGGA
AAATCATCAAAAATTAAAACGTCGTCAGCTGCGGAGCAGGAGCATCGTAA
GAAGGTACTGCGCGAACTTAACTCGTTGATTTCTGGATCAACGTCTTCGC
CGACTGATGATGCTGTTGATGAAGAGGTTACAGATACAGAATGGTTCTTT
TTGATTTCGATGACTCAGTCTTTTTACGTGACCGGAGGCGGTGGCGGTGG
CGGGCTGCCGGGTCAAGCGTATTTTGGTAACAGTCCGGTTGGGGTTAGCG
GAACGGAACGACTGGCGAAATCAGGGTGTGACCCGGCCAGACAGGGGCCG
GTTTTTCGGGTACAGAATTTGTTTTGATACCGTCCGCCAATGGGGTTGGT
TAAATTGGGGTCCCCTGAAGGTGATTACTTCAAACTTGGAATCCGGATAA
ATAAGGGTCCAATTTTTGTTTAATTTTTAATGGCAATAAGGGGAAAGGGG
AACTGGTCCCTCTGCCTTTCAAAACCCTGGTCACAGGGAACAAACAACTC
CCCCCCCGTGAAACAAAAGATCCCCCTTCCCCATCCCCGCCCCCCCCCCG
GCGGGGGTTCTTAAGAAAAATAAAAAACAACTAAGCCGAGTCTTCGGGCA
CACCCAAAAACAAAAGCAAATCTCAAAAGATGAAGAACAAAATCCTACTT
AAATGCTTTATTTTGGGATGCTGCACCCCCTTCACTCCCTCCTTGCCAAA
CCTCTAT
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