DY270365

Overview
NameDY270365
Unique NameDY270365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1361
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.504e-66
Identity = 116/139 (83.45%), Postives = 128/139 (92.09%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNIAYQGRFAF DF  LNLP +FKSSFDFIDGY KPV+GRKINWMKAGILESD VLTVSP+YAQE++SG ++GVELDN IRKTGI GI+NGMDVQEWNP+TDKYI + YDA+TVMDAKPLLKEALQAEVGLPVDRN+P
Sbjct:  262 IHNIAYQGRFAFSDFPRLNLPDKFKSSFDFIDGYEKPVKGRKINWMKAGILESDRVLTVSPYYAQEVISGVERGVELDNFIRKTGIAGIINGMDVQEWNPVTDKYIDIHYDATTVMDAKPLLKEALQAEVGLPVDRNVP 400

HSP 2 Score: 29.6462 bits (65), Expect = 2.504e-66
Identity = 15/34 (44.12%), Postives = 19/34 (55.88%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            P+I FIGRLEEQKG      A     +  V I++
Sbjct:  400 PLIGFIGRLEEQKGSDIFVAAISQLVEHNVQIVI 433
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.532e-62
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNIAYQGRF   DF LLNLP QFKSSFDF DGY KPV+GRKINWMKAGILESD V+TVSP+YA ELVSG +KGVELDN+I KT I GIVNGMD QEWNP TDK+I   YD +TVMDAKPLLKEALQA VGLPVD+NIP
Sbjct:  262 IHNIAYQGRFGSSDFCLLNLPDQFKSSFDFFDGYEKPVKGRKINWMKAGILESDRVVTVSPYYAMELVSGAEKGVELDNVIAKTSITGIVNGMDTQEWNPATDKHIDTNYDITTVMDAKPLLKEALQAAVGLPVDKNIP 400

HSP 2 Score: 31.5722 bits (70), Expect = 3.532e-62
Identity = 18/34 (52.94%), Postives = 20/34 (58.82%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            PVI FIGRLEEQKG   L  A   +    V II+
Sbjct:  400 PVIGFIGRLEEQKGSDILVAAISKFVGLDVQIII 433
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.950e-61
Identity = 110/139 (79.14%), Postives = 121/139 (87.05%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNIAYQGRF+F DF LLNLP +F+ SFDFIDGY KPV+GRKINWMKAGILES  V+TVSP+YAQELVS  DKGVELD+++RKT I GIVNGMD QEWNP TDKY  VKYD +TVMDAKPLLKEALQA VGLPVD+ IP
Sbjct:  261 IHNIAYQGRFSFSDFPLLNLPDEFRGSFDFIDGYEKPVKGRKINWMKAGILESHRVVTVSPYYAQELVSAVDKGVELDSVLRKTCITGIVNGMDTQEWNPATDKYTDVKYDITTVMDAKPLLKEALQAAVGLPVDKKIP 399

HSP 2 Score: 29.261 bits (64), Expect = 2.950e-61
Identity = 14/21 (66.67%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATA 480
            P+I FIGRLEEQKG   L  A
Sbjct:  399 PLIGFIGRLEEQKGSDILVAA 419
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.890e-60
Identity = 107/139 (76.98%), Postives = 118/139 (84.89%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNI+YQGRFAF DF  LNLP +FKSSFDFIDGY KPV GRKINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI VKYD ST ++AK L KEALQAEVGLPVDR IP
Sbjct:  262 IHNISYQGRFAFSDFPELNLPERFKSSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIAVKYDVSTAVEAKALNKEALQAEVGLPVDRKIP 400

HSP 2 Score: 35.8094 bits (81), Expect = 1.890e-60
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            P++ FIGRLEEQKG   +A A P   ++ + I+L
Sbjct:  400 PLVAFIGRLEEQKGPDVMAAAIPLLMEEDIQIVL 433
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.213e-60
Identity = 109/139 (78.42%), Postives = 118/139 (84.89%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNIAYQGRFAF DF LLNLP ++K SFDFIDGY+KPV+GRKINWMKAGI E+D V TVSP+YA+ELVS   KGVELDN IR  GI GI NGMD QEWNP TDKY+ VKYD +TVM AKPLLKEALQA VGLPVDRNIP
Sbjct:  262 IHNIAYQGRFAFSDFSLLNLPDEYKGSFDFIDGYDKPVKGRKINWMKAGIREADRVFTVSPNYAKELVSCVSKGVELDNHIRDCGITGICNGMDTQEWNPATDKYLAVKYDITTVMQAKPLLKEALQAAVGLPVDRNIP 400

HSP 2 Score: 30.0314 bits (66), Expect = 3.213e-60
Identity = 16/34 (47.06%), Postives = 20/34 (58.82%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            P+I FIGRLEEQKG   L  A   +    V I++
Sbjct:  400 PLIGFIGRLEEQKGSDILYAAISKFISMDVQILI 433
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.213e-60
Identity = 106/139 (76.26%), Postives = 120/139 (86.33%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNIAYQGR AF DF LLNLP +F+SSFDFIDGYNKP  G+KINWMKAGILESD V TVSPHYA+EL+SGED+GVELDNIIR TGI GIVNGMD +EW+P TD+YI V Y+ +TV +AKPLLK  LQAE+GLPVD +IP
Sbjct:  257 IHNIAYQGRNAFSDFSLLNLPDEFRSSFDFIDGYNKPCEGKKINWMKAGILESDQVFTVSPHYAKELISGEDRGVELDNIIRSTGIIGIVNGMDNREWSPQTDRYIDVHYNETTVTEAKPLLKGTLQAEIGLPVDSSIP 395

HSP 2 Score: 31.9574 bits (71), Expect = 3.213e-60
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            P+I FIGRLEEQKG   L  A   +  + V I++
Sbjct:  395 PLIGFIGRLEEQKGSDILVEAIAKFADENVQIVV 428
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.121e-60
Identity = 107/139 (76.98%), Postives = 119/139 (85.61%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNI+YQGRFAF D+  LNLP +FKSSFDFIDGY KPV GRKINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI VKYD ST ++AK L KEALQAEVGLPVDRNIP
Sbjct:  257 IHNISYQGRFAFSDYPELNLPERFKSSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSRDKYIAVKYDVSTAVEAKALNKEALQAEVGLPVDRNIP 395

HSP 2 Score: 32.7278 bits (73), Expect = 7.121e-60
Identity = 16/37 (43.24%), Postives = 22/37 (59.46%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIILPLL 528
            P++ FIGRLEEQKG   +A A P   +    + + LL
Sbjct:  395 PLVAFIGRLEEQKGPDVMAAAIPQLMEMVEDVQIVLL 431
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.058e-59
Identity = 103/139 (74.10%), Postives = 119/139 (85.61%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNIAYQGRFAF+D+ LLNLP  FKSSFDF+DGY KPV+GRKINWMKA ILE+  VLTVSP+YAQEL+SG D+GVEL   +R   + GI+NGMDVQEWNP TDKYI +KYD +TV DAKPL+KEALQA VGLPVDR++P
Sbjct:  264 IHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDGYEKPVKGRKINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLIKEALQAAVGLPVDRDVP 402

HSP 2 Score: 30.4166 bits (67), Expect = 2.058e-59
Identity = 16/34 (47.06%), Postives = 20/34 (58.82%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            PVI FIGRLEEQKG   L  A   +    V +++
Sbjct:  402 PVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVI 435
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.058e-59
Identity = 103/139 (74.10%), Postives = 117/139 (84.17%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNI+YQGRFAFED+  LNL  +FKSSFDFIDGY+ PV GRKINWMKAGILESD VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR +P
Sbjct:  260 IHNISYQGRFAFEDYPELNLSERFKSSFDFIDGYDTPVEGRKINWMKAGILESDRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITTKYDATTAIEAKALNKEALQAEAGLPVDRKVP 398

HSP 2 Score: 39.2762 bits (90), Expect = 2.058e-59
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            P+I FIGRLEEQKG   +A A P   Q+ V I+L
Sbjct:  398 PLIAFIGRLEEQKGPDVMAAAIPELMQENVQIVL 431
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.011e-58
Identity = 102/139 (73.38%), Postives = 117/139 (84.17%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR IP
Sbjct:  263 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIP 401

HSP 2 Score: 38.891 bits (89), Expect = 1.011e-58
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            P+I FIGRLEEQKG   +A A P   Q+ V I+L
Sbjct:  401 PLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVL 434
The following BLAST results are available for this feature:
BLAST of DY270365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
SSG1_MANES2.504e-6683.45Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA3.532e-6279.86Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU2.950e-6179.14Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI1.890e-6076.98Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA3.213e-6078.42Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA3.213e-6076.26Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE7.121e-6076.98Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH2.058e-5974.10Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_ORYSA2.058e-5974.10Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ1.011e-5873.38Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270365 ID=DY270365; Name=DY270365; organism=Citrus clementina; type=EST; length=1361bp
GTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGA
CTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGG
ATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAA
TATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAA
CTTGTTTCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAA
AACTGGCATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACC
CCTTGACTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATG
GATGCGAAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCC
TGTCGATAGAAATATTCCCTGTCATATGCTTCATTGGTAGACTTGAAGAG
CAGAAAGGCCTACATACTCTTGCCACTGCCAATCCCCATTATCATCAAAA
AAAAGTTCCCATAATACTACCCTTGCTCCTGGCAAACCAACCAATCGCAG
AACCCCCTAGAACAGTCGGAAGACACTGTACCACCTAGACACCACACAGA
CCTAACCGCGTTCCATAATCCCCACCGCCCATACAAATACATGACACTAC
CGAGTTTACATCTACGTAAGATCACAAACTGACGTTCCCAGTGACATTTT
ACCCCCCTCCCAACCGCACCACCTCCTTCTCCCTCCTCCTCCCTCCAGCC
CGCCGAACAAAAACACCACAAGAAAAACAATCACACCCAACCGAGTCCAC
TCCGCTCCCACCTCACGTACACCTCGCAGAGCACATTCAAACAGTCTCAC
CTATCCGACCTAACCCCTCTAACCCACACTCTACGACCGCCTCTTCCCAT
ACCTCAACACACTACACACCACATGCAGACAACATCTAAACCATATACTC
CCAATACTCGGCCATATAAAAATCTGTCAGACCAACACCACGCCCCCCCC
ATCTACCCCTCCCCCGCCCCACCCTCCCCGCCGACTCCCCTCCCCCTGCC
ATATATCCCCTCTAAAACTTCTAATAATACAACCTACCGTGACCCACTAC
GTCACCCCTACCATTACTGACCCTTTGCCTTCCATATTCATTACAACACT
ACGCCCACTGAACCATTACCCCCGACGCACCTTCCCACACCTCTCCCTTT
TTCACCACACTACATTTTCACCACATATTACCCTACATAATAATCGCACA
GCTCCACTTAACACTAATCCCATTCTTTTTCGCACACTACTCTACTCCCC
CCACAACTACATCAGATTACGCCATCTAACACTTATCAATCCTAAACCAC
TACATCCCACC
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