DY270366

Overview
NameDY270366
Unique NameDY270366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1172
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig159 contig Ccv1_Contig159:210..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270366 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 385.956 bits (990), Expect = 2.362e-106
Identity = 193/267 (72.28%), Postives = 213/267 (79.78%), Query Frame = 3
Query:    3 EQEDKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGEIICFQKSPPLQSEQECRYPEVPSFLEYGPNPANCRFSALDKPKK 803
            EQE+KEDKRRYKAQAHLYTIIKVARDEDL EQIG+DIYFDLVDHDKVRSFR+QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL PQEE Q VGQ+RE SNK +TAEL+LFLEVE   DL PI PP+KSK+DILLFFKLYDPEK  L Y GRL +KSSSKP++I  KLN+M G                 CVMCEHLDK+TSFRL QIEDG+IICFQK P +  E EC YP VPSFLEY  N    RF AL+KPK+
Sbjct:  550 EQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREASNKANTAELKLFLEVEH-LDLRPIPPPEKSKEDILLFFKLYDPEKAVLSYAGRLMVKSSSKPMDITGKLNEMVGFAPDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQK-PLVNKEIECLYPAVPSFLEYVQNRQLVRFRALEKPKE 814          
BLAST of DY270366 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 7.863e-102
Identity = 180/267 (67.42%), Postives = 212/267 (79.40%), Query Frame = 3
Query:    3 EQEDKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGEIICFQKSPPLQSEQECRYPEVPSFLEYGPNPANCRFSALDKPKK 803
            EQE+KEDKR+YKAQAHL+T IKVARD+D+ EQIG++IYFDLVDH+KVRSFR+QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL P EE QTVGQ+RE SNK + AEL+LFLE+E GPD  PI PP+K+ +DILLFFKLYDPE   LRYVGRL +KSSSKP++I+ +LN+MAG                 CVMCE +DK+TSFRL QIEDG+IIC+QK P    E E RYP+VPSFLEY  N    RF  L+KPK+
Sbjct:  548 EQEEKEDKRKYKAQAHLFTTIKVARDDDITEQIGKNIYFDLVDHEKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREASNKANNAELKLFLEIERGPDDLPIPPPEKTSEDILLFFKLYDPENAVLRYVGRLMVKSSSKPMDIVGQLNKMAGFAPDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQK-PLSIEESEFRYPDVPSFLEYVQNRELVRFRTLEKPKE 813          
BLAST of DY270366 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.277e-15
Identity = 72/257 (28.02%), Postives = 111/257 (43.19%), Query Frame = 3
Query:    6 QEDKE---DKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRS--FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAP--PDKSKD-DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGEIICFQKSPPLQSEQECRYPEVPSFLEY 752
            QE+K     KR+ + +AHLY  +++  ++      G D+Y    D +KVR   F+V K +S   F + +++  G P    R W    R N T    RP +   EA     + E+S+  +     +FLE    P+L       P   KD D++LF K+YDP+   L Y G ++   S K  ++L  +   AG                     +  D      L ++ DG+II FQK  P     E    E+P+  EY
Sbjct:  546 QEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGT---KRPAMLDNEADGSKTMIELSDNENP--WTIFLET-VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDP-----ENDNSELPTAKEY 787          
BLAST of DY270366 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.586e-15
Identity = 72/257 (28.02%), Postives = 111/257 (43.19%), Query Frame = 3
Query:    6 QEDKE---DKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRS--FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAP--PDKSKD-DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGEIICFQKSPPLQSEQECRYPEVPSFLEY 752
            QE+K     KR+ + +AHLY  +++  ++      G D+Y    D +KVR   F+V K +S   F + +++  G P    R W    R N T    RP +   EA     + E+S+  +     +FLE    P+L       P   KD D++LF K+YDP+   L Y G ++   S K  ++L  +   AG                     +  D      L ++ DG+II FQK  P     E    E+P+  EY
Sbjct:  546 QEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGT---KRPAMLDNEADGNKTMIELSDNENP--WTIFLET-VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDP-----ENDNSELPTAKEY 787          
BLAST of DY270366 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.244e-14
Identity = 71/257 (27.63%), Postives = 111/257 (43.19%), Query Frame = 3
Query:    6 QEDKE---DKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRS--FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAP--PDKSKD-DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGEIICFQKSPPLQSEQECRYPEVPSFLEY 752
            QE+K     KR+ + +AHLY  +++  ++      G D+Y    D +KV+   F+V K +S   F + +++  G P    R W    R N T    RP +   EA     + E+S+  +     +FLE    P+L       P   KD D++LF K+YDP+   L Y G ++   S K  ++L  +   AG                     +  D      L ++ DG+II FQK  P     E    E+P+  EY
Sbjct:  545 QEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGT---KRPAMLDNEADGNKTMIELSDNENP--WTIFLET-VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDP-----ENDNSELPTAKEY 786          
BLAST of DY270366 vs. ExPASy Swiss-Prot
Match: UBP7_CHICK (Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.123e-14
Identity = 69/257 (26.85%), Postives = 112/257 (43.58%), Query Frame = 3
Query:    6 QEDKE---DKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRS--FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAP--PDKSKD-DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGEIICFQKSPPLQSEQECRYPEVPSFLEY 752
            QE+K     KR+ + +AHLY  +++  ++      G D+Y    D +KV+   F+V K ++   F + +++  G P    R W    R N T    RP +   EA     + E+S+  +     +FLE    P++       P   KD D++LF K+YDP+   L Y G ++   S K  ++L  + + AG                     +  D      L ++ DG+II FQK  P     E    E+P+  EY
Sbjct:  545 QEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWPMQARSNGT---KRPAMLDNEADGNKTMIELSDNENP--WTIFLET-VDPEMAATGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCERAGFPQETNLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDP-----ENDSSELPTAKEY 786          
BLAST of DY270366 vs. ExPASy Swiss-Prot
Match: UBP5_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe GN=ubp5 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 4.894e-11
Identity = 58/236 (24.58%), Postives = 105/236 (44.49%), Query Frame = 3
Query:   18 EDKRRYKAQAHLYTIIKVARDEDLAEQIGRDI--YFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDL-HPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGEIICFQKSPPLQSEQE 716
            E +R+ + ++HLYT +++   E  +E    DI  + +    + +  FR++K+  F  F   +A++ G P +  RFW   KR N T R   P+   E   T+ +++ V N +    LRL+LE+    +L   +   +  + +  +F K +D +  E+   G L +  S +   I   L + A                    M + L    +F  S++  G+IICF+   P   E +
Sbjct:  559 ELRRKERLESHLYTKVQLITPEFYSEHHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTVRVESPV--NELNSTMEEVKNVWN-SQGEILRLYLEITPENELSSSLTHQNTGEWNAFIFVKYFDRKSQEISGCGTLHVNKSDEIRSICPLLCERANLPKNTPLNIYEEIKPG---MVDFLRLEKTFTQSELSTGDIICFEPCRPSALEDD 788          
The following BLAST results are available for this feature:
BLAST of DY270366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UBP12_ARATH2.362e-10672.28Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH7.863e-10267.42Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP7_RAT4.277e-1528.02Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE5.586e-1528.02Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_HUMAN1.244e-1427.63Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
UBP7_CHICK2.123e-1426.85Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus ... [more]
UBP5_SCHPO4.894e-1124.58Probable ubiquitin carboxyl-terminal hydrolase 5 O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YG09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270366 ID=DY270366; Name=DY270366; organism=Citrus clementina; type=EST; length=1172bp
AAGAACAGGAAGATAAGGAGGACAAGAGAAGATATAAAGCACAAGCCCAT
CTTTACACTATCATCAAGGTTGCACGAGATGAGGACCTTGCAGAGCAGAT
TGGAAGGGATATATATTTTGACCTGGTGGATCATGACAAAGTTCGTAGTT
TCCGTGTTCAGAAACAAACGTCATTTATGGCTTTTAAGGAGGAAATTGCC
AAAGAGTTTGGTATACCAATACAGCTTCAGCGTTTTTGGATTTGGGCAAA
GCGTCAAAATCATACATATCGTCCCAATAGACCATTGCTACCCCAGGAGG
AAGCACAAACTGTTGGACAATTGAGAGAGGTTTCAAATAAGACGCACACC
GCCGAACTAAGGTTGTTCTTGGAAGTAGAGTTTGGGCCGGATCTACATCC
TATTGCTCCACCTGATAAATCTAAAGATGACATTCTGCTTTTCTTCAAGC
TTTATGATCCCGAGAAAGGAGAACTTCGATATGTTGGTAGGCTTTTTTTA
AAGAGTTCCAGTAAGCCAATAGAAATTTTGAGGAAGCTAAATCAAATGGC
TGGCTTTGATCCTGATGAAGAAATAGAACTCTATGAGGAAATCAAGTTTG
AGCCGTGTGTTATGTGTGAACATCTTGATAAGAGGACCTCATTCCGGTTA
AGTCAGATTGAAGATGGAGAAATCATCTGCTTTCAGAAATCTCCTCCGCT
CCAAAGTGAACAAGAATGCCGATATCCCGAGGTGCCTTCATTTTTGGAAT
ACGGGCCTAACCCGGCGAATTGCCGTTTTTCAGCCTTGGACAAACCAAAA
AAAATGCTTTTGGTCTAAAAGTGTCTAAGCACCTAATTATGAAGAGGTTG
TGGAAAAATGGCTCCAAAATTGGGTTGGATAAACCCACCAAAATCGGGCC
CCCCCCCATACCTCCCCCCCACACCACCTAAACCCCCCCCCCATATATTT
CCGGAATTGAAACACCTGTCCAAAGGTTTGACCCAAAACAACCCACTCCC
TGAATTTTTTCGATCAATTTTTTAATTTCCCTCTTCTGACTAGCAAGGGT
TAAAAAAACCCTCACTTTTGCCTTATCTCGCGCTCACCCGCCGGAGGTGG
TGTCATATCAACTATTGTTTTTACCAATACCCATTACACCCATCGTGTGT
GTTCTCTTAATATACACATTAA
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