DY270367

Overview
NameDY270367
Unique NameDY270367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1314
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.445e-43
Identity = 92/158 (58.23%), Postives = 106/158 (67.09%), Query Frame = 3
Query:   96 AACSPLVPNPAH---HRLTAASSTVRF--RQISAVAAPPKP-------KTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            A  S  +P   H   HR+  ASST+    ++I     P  P       KTHSMPP+K+E+FKSLE WA  NVL  LKPVEKCWQPQ FLPDP      F DQV+ LRERT  +PD+Y VVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS    AIW
Sbjct:   15 AVTSSGLPRSYHLRSHRVFMASSTIGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPAS--EGFMDQVKELRERTKEIPDEYLVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 170          

HSP 2 Score: 30.0314 bits (66), Expect = 2.445e-43
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  172 RAWTAEENRHGDLLNKYLYLTGRVDMKQIEK 202          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.636e-42
Identity = 86/168 (51.19%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   54 MQASQFLVTSTKPPAACSPLVPNPAHHRL----TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            ++ + FL  + K P+   P + +    +     T  S +     +     PP+      THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQ FLPDP      F +QVR LRER   +PDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS    AIW
Sbjct:    3 LKLNPFLSQTQKLPSFALPPMASTRSPKFYMASTLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPAS--DGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIW 168          

HSP 2 Score: 30.4166 bits (67), Expect = 7.636e-42
Identity = 16/39 (41.03%), Postives = 21/39 (53.85%), Query Frame = 1
Query:  514 PAHGLFGNRARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            P       RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  162 PTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK 200          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.296e-41
Identity = 82/135 (60.74%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  141 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            T  S +     I     PP+      THSMPP+K+E+F+SLE WA  N+L  LKPVEKCWQPQ FLPDP+     F +QV+ LRER   LPDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS    AIW
Sbjct:   31 TLRSGSKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFLPDPSS--DGFEEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 163          

HSP 2 Score: 30.0314 bits (66), Expect = 1.296e-41
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  165 RAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 195          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.689e-41
Identity = 78/109 (71.56%), Postives = 88/109 (80.73%), Query Frame = 3
Query:  207 THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            THSMPP+K+E+FKSLE WA  N+L  LKPVE+CWQPQ FLPD    F  F +QVR LRER   LPD+YFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS  P AIW
Sbjct:   62 THSMPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFLPDSA--FEGFHEQVRELRERAKELPDEYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIW 168          

HSP 2 Score: 29.6462 bits (65), Expect = 1.689e-41
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  +EK
Sbjct:  170 RAWTAEENRHGDLLNKYLYLSGRVDMRQVEK 200          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.201e-41
Identity = 88/160 (55.00%), Postives = 102/160 (63.75%), Query Frame = 3
Query:   66 QFLVTSTKPPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            Q + T+ +P   CSPL         T    +V    +    +PP+      THSMPPEK E+F SL  WA NN+L  LKPVEKCWQ   FLPDP      F DQV+ LRER   +PDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS  P AIW
Sbjct:   11 QSIKTTRRP---CSPLRSPRVFMASTLRPPSVEDGNVKKPFSPPREVHVQVTHSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPAS--EGFEDQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIW 165          

HSP 2 Score: 30.0314 bits (66), Expect = 2.201e-41
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  167 RAWTAEENRHGDLLNKYLYLSGRVDMRQIEK 197          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.737e-41
Identity = 80/135 (59.26%), Postives = 94/135 (69.63%), Query Frame = 3
Query:  141 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            T  SST +         PP+      THSMPP+K+E+FKS+E WA  N+L  LKPVEKCWQ Q FLPDP      F +QV+ LR R   +PDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS  P A+W
Sbjct:   36 TLGSSTPKVDNAKKPFQPPREVHVQVTHSMPPQKIEIFKSIEGWAEQNILVHLKPVEKCWQAQDFLPDPAS--EGFDEQVKELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAVW 168          

HSP 2 Score: 31.187 bits (69), Expect = 3.737e-41
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL  T++ +  ++ M  I+K
Sbjct:  170 RAWTAEENRHGDLLHTYLYLSGRVDMRQIQK 200          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.077e-40
Identity = 83/151 (54.97%), Postives = 95/151 (62.91%), Query Frame = 3
Query:   93 PAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            P  CS           T    +V    +     PP+      THSMPPEK+EVF SL  WA  N+L  LKPVEKCWQP  FLPDP      F +QV+ LRER   +PDDYFVVL+GDMIT+ A+PTYQTMINTLDGVRDETGA+  P AIW
Sbjct:   17 PFPCSSARSERVFMASTIHRPSVEVGSVKKAFTPPREVHVQVTHSMPPEKIEVFDSLRDWAAQNLLVHLKPVEKCWQPTDFLPDPAS--EGFDEQVKELRERCKEIPDDYFVVLIGDMITEEALPTYQTMINTLDGVRDETGATVTPWAIW 165          

HSP 2 Score: 30.0314 bits (66), Expect = 1.077e-40
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  167 RAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 197          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.829e-40
Identity = 84/159 (52.83%), Postives = 104/159 (65.41%), Query Frame = 3
Query:   78 TSTKPPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPKT-------HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            +S +PP +      +P    L ++S  +  +++ ++  P  P         HSMPP+K+E+FKS+E WA  N+L  LK VEK WQPQ FLPDP      F DQVR LRER   LPDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS    AIW
Sbjct:   17 SSARPPIST---FRSPKFLCLASSSPALSSKEVESLKKPFTPPKEVHVQVLHSMPPQKIEIFKSMEDWAEQNLLTQLKDVEKSWQPQDFLPDPAS--DGFEDQVRELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIW 170          

HSP 2 Score: 30.4166 bits (67), Expect = 1.829e-40
Identity = 16/39 (41.03%), Postives = 21/39 (53.85%), Query Frame = 1
Query:  514 PAHGLFGNRARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            P       RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  164 PTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK 202          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.383e-40
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  195 PKPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            P   THSMPP K+E+FKSLE WA NN+L  LKPVEKCWQP  FLPDP      F +QV+ LRER   +PDDYFVVLVGDMIT+ A+ TYQTM+NTLDG RDETGAS  P AIW
Sbjct:   58 PVQITHSMPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFLPDPNS--DGFHEQVKELRERAKEIPDDYFVVLVGDMITEEALSTYQTMLNTLDGTRDETGASLTPWAIW 168          

HSP 2 Score: 28.8758 bits (63), Expect = 2.383e-40
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IE+
Sbjct:  170 RAWTAEENRHGDLLNKYLYLSGRVDMRQIER 200          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.270e-40
Identity = 73/109 (66.97%), Postives = 88/109 (80.73%), Query Frame = 3
Query:  207 THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            THSMPP+K+E+FKSLE WA NN+L  LKPVEKCWQPQ FLPDP+     F ++V+ LRER+  +PD Y+V LVGDMIT+ A+PTYQTM+NTLDGVRDETGAS    A+W
Sbjct:   59 THSMPPQKIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPDPSS--EGFHEEVKELRERSKEIPDGYYVCLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAVW 165          

HSP 2 Score: 30.0314 bits (66), Expect = 5.270e-40
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  167 RAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 197          
The following BLAST results are available for this feature:
BLAST of DY270367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_SIMCH2.445e-4358.23Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_RICCO7.636e-4251.19Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOYBN1.296e-4160.74Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA1.689e-4171.56Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO2.201e-4155.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CARTI3.737e-4159.26Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU1.077e-4054.97Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA1.829e-4052.83Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI2.383e-4068.14Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV5.270e-4066.97Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270367 ID=DY270367; Name=DY270367; organism=Citrus clementina; type=EST; length=1314bp
CAAAATCAGTTCCTTTTGAAAGACGCACACTCCCTGTGCTAAGTGCCACC
ACCATGCAAGCATCTCAGTTTCTCGTCACTTCCACCAAACCTCCTGCTGC
GTGCTCTCCACTTGTCCCTAATCCCGCCCACCATCGTCTCACCGCCGCAT
CCTCCACCGTCCGATTCCGGCAAATCTCCGCCGTCGCAGCACCACCGAAA
CCAAAAACACATTCAATGCCACCCGAAAAAGTCGAAGTCTTCAAGTCACT
AGAAACCTGGGCCACCAATAACGTGTTACCATTACTCAAACCAGTAGAGA
AATGCTGGCAGCCCCAATACTTCTTACCCGATCCGACGCTGCCTTTTTCG
GACTTCACTGACCAAGTCAGGGCCCTACGTGAACGCACTGCGGGGCTACC
TGACGATTACTTTGTTGTGCTGGTGGGTGACATGATCACTGATAACGCCA
TTCCCACTTATCAGACGATGATTAATACGCTTGATGGTGTCAGAGATGAG
ACCGGTGCAAGTTCCCGCCCACGGGCTATTTGGGAACCGCGCCCGGACTG
ATGAGGAAAACCGCCATGGAGACTTGCCTCTGACCTTCATGAATATACCA
TGTCAGATACACATGATTTATATTGAAAAAAAACCCATAATTCCTTTATA
CTTCTAGATATCTTTTCCCTACCTTACAACCATCTCGAAACCAACATTAT
ATTTCATATTATCTCGACGTACCTGCCCCTCTGTCTCCTCATCTCTTTTA
TTTAGTCTTGATTCATTATATTTCATAATCTTCTACGTAAATAATCACTC
AATCGGCCCACTCCACCCAAATTCCTACCTCCAAATTTCCCTTAGCACCC
TGCGTGTGGCATATACCGAAGTACTTCTAGCTTTACACCAGTTAACTCTA
TTTTTTTCACTGATAATTCCTTTTTTGTATATATCTACTACTCTATCTAC
TTACATGCCTACGTACAACCGCACTCAGCCCCAAACTCGACTCCCACACA
TAACACACACTCAATTGTTTCTATAAACCTCAAGTATCCTCGCATATGCA
CAATCATCTGCTCTATTACTCATTCCCGAATAAATCAACTCATTATACTC
TCGATATATCCCCAGCTTTATCGTTACATTAAATTATCATAACCTTTGAA
TTCGTCATTATTTTTTTCCTTTCTCTATTTAATTTAACTTCATTATAGCT
AACATTTACATATTATGCTTATATCGATAATATAAGCTGTACTGCAATAT
TGACCTGTTTACTAATCACTTATATCTACTAACGCTACCTAAAGCTAAAC
ACATCAGCTCACGC
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