DY270393

Overview
NameDY270393
Unique NameDY270393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1291
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11243 contig Ccv1_Contig11243:789..2079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY270393 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.327e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:    2 KAGPCSLDIVISESGWPTAGGDGALTNVFNARTYNNNLIQHVKQGSPKKPGRP 160
            KA   SL+IV+SESGWP+AG  G LT++ NARTYNNNLI HVK GSPK+P  P
Sbjct:  250 KASGSSLEIVVSESGWPSAGA-GQLTSIDNARTYNNNLISHVKGGSPKRPSGP 301
[Close]
BLAST of DY270393 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.467e-11
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:    2 KAGPCSLDIVISESGWPTAGGDGALTNVFNARTYNNNLIQHVKQGSPKKPGRP 160
            KAG  SL+IV+SESGWP++GG    T++ NARTYN NL+++VKQG+PK+PG P
Sbjct:  258 KAGGGSLNIVVSESGWPSSGGTA--TSLDNARTYNTNLVRNVKQGTPKRPGAP 308
[Close]
BLAST of DY270393 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.574e-11
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:    2 KAGPCSLDIVISESGWPTAGGDGALTNVFNARTYNNNLIQHVKQGSPKKPGR 157
            K+G  SL+IV+SE+GWPT G  G  T+V NA+TY NNLIQHVK GSP++PG+
Sbjct:  251 KSGGGSLEIVVSETGWPTEGAVG--TSVENAKTYVNNLIQHVKNGSPRRPGK 300
[Close]
BLAST of DY270393 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.508e-11
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:    2 KAGPCSLDIVISESGWPTAGGDGALTNVFNARTYNNNLIQHVKQGSPKKPGRP 160
            KAG  SL +VISE+GWP+A G    T + NART+ +NLIQHVK+G+P++PGRP
Sbjct:  262 KAGGGSLKVVISETGWPSAAGTA--TTIDNARTFISNLIQHVKEGTPRRPGRP 312
The following BLAST results are available for this feature:
BLAST of DY270393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
E13H_TOBAC1.327e-1267.92Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13A_SOYBN1.467e-1162.26Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13A_ARATH5.574e-1163.46Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_PRUPE9.508e-1160.38Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YH18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270393 ID=DY270393; Name=DY270393; organism=Citrus clementina; type=EST; length=1291bp
GAAAGCCGGTCCTTGCTCGTTGGATATTGTGATATCGGAGAGTGGGTGGC
CAACGGCGGGTGGTGACGGAGCGTTAACGAATGTTTTTAATGCAAGGACT
TATAATAATAACTTGATACAGCATGTGAAGCAAGGGTCACCAAAGAAACC
TGGCAGGCCGAGCTGAGACTCTCCTTTCTGCCATGCTTGATGACAAAGAC
ACCACCGGCCCCTAACATTATAATCTATGTTACACTTTCATGTTCCATGA
CATCTATCATATATCCTTCCCTTCTCTATTCTAATGAAACCATCCCTTAT
CGTCCCCCCTTCAGTTTTTCTTTTTCTAAAAGACAAGCTCTCATACGCAA
CCACGAAAGAAAGACAAATTATACCACCCATCAACTACAGCCACTCATAG
GAAGTTAAAATATATAGTTACCTCCACCATCCCCCTACCCCAAACTAAAC
CATCTCCCCCACAACCCCCTCCACTCACCCTCACCCACACTACCACCAAT
TCATTGTACATTTTTTCTCCTCCCCCCTTCTTATCTACCATTATCACTAC
CCAACGCACCCAATATAACATAATTCTAAATATACATACACGACAAAAAC
AAAAAGCTAAGCACACACCAGCAATCACTCCACAACACCCATCCCACCCC
TACACACCCCACCACCTACAACCATACCCCCACTCCGTCACCCACAAATC
CAAGATTCTATAAACTTCAAATCATATTTAATTATATTAAAACTCCAACC
ACCCTCCACCCTCCCTTTCTCCTCCCCCCCTTTTTTTTTTTCTCTCTCCT
TCTTTTCTTTTTTTTATTCCACCATTTCACTCCCCGCTCAATGACTTCCC
CTCACTTCGTCATATCCCTCTACCCGGACCAAACATCCTCTACCTCCCCC
ATCACAACAAATGCCACTTCCGAAGCAAACAATCACCCTAAATTTCACTC
CTTCAACATAAACACAACACCCATACTCAACCCTCCAACGTCACTTCACC
CAATACACATCCCAACAAACACCTCTCCACCAACTCATCACGCTACACAC
CCCTTTCTACAACCCTAACCCTTCCTTGTACACACCAACACCCTTCTCCT
TCTCCCTCTCTTAACCCAACTAACATTTTACTCTTCACTTTTCCCCCAAA
TCCTTTCTTACTCAACCATATTCTCTTATCTATCTTTCTATCTATTCATA
CTTTTTACTATTACACATTTTCCAGTAATTCTATGTCACAATGAGTGCAC
ACCCACTACGCCCCATCCCGTTACTCTCTATCCTGTCTCTA
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