DY270394

Overview
NameDY270394
Unique NameDY270394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1208
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3602 contig Ccv1_Contig3602:1..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 2.024e-97
Identity = 171/219 (78.08%), Postives = 187/219 (85.39%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSKPPNKT 657
            V+VL QVFSP+GFVEK+VTFQKSAGFQALIQYQ++  A  AR++LQGRNIYDGCCQLDIQFSNL+ELQVNYNN+RSRD+TNPNLPAEQKGR S   Y + G         VA+PQM         FGGGLPPGITGTNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVHFLKGA+LFGKRL+VNFSK PN T
Sbjct:  114 VDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTG---------VAYPQMANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNIT 323          

HSP 2 Score: 36.965 bits (84), Expect = 2.024e-97
Identity = 26/67 (38.81%), Postives = 35/67 (52.24%), Query Frame = 3
Query:  687 NPTLNRFIRNALKNYRYWLLPNQEKPPFHF*PQNVTEKEFASPPERERPSIPKPHPFENKWKKKSPV 887
            N  LNRF RNA KNYRY   P  +       PQ+VTE+E  +  + E  ++     FE   KK++ V
Sbjct:  333 NSNLNRFNRNAAKNYRYCCSPT-KMIHLSTLPQDVTEEEVMNHVQ-EHGAVVNTKVFEMNGKKQALV 397          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.201e-38
Identity = 91/218 (41.74%), Postives = 125/218 (57.34%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSKPPN 651
            ++VL Q+FS  G V KI+TF K+  FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+           + A G+  P       P             G +  PG+ G  +   +LVSNLN +R+    LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+  L G  L GK +++  SK  N
Sbjct:  197 LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 413          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.405e-38
Identity = 90/215 (41.86%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            ++VL Q+FS  G V KI+TF K+  FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+           + A G+  P       P             G +  PG+ G  +   +LVSNLN +R+    LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+  L G  L GK +++  SK
Sbjct:  197 LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.995e-36
Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP------SQSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            ++VL Q+FS  G V KI+TF K+  FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+   G+P      + +   E   +  PGA + +A P              G+P    G N    +LVSNLN + +    LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G  ++GK ++V  SK
Sbjct:  194 LDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 5.995e-36
Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP------SQSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            ++VL Q+FS  G V KI+TF K+  FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+   G+P      + +   E   +  PGA + +A P              G+P    G N    +LVSNLN + +    LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G  ++GK ++V  SK
Sbjct:  194 LDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.995e-36
Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP------SQSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            ++VL Q+FS  G V KI+TF K+  FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+   G+P      + +   E   +  PGA + +A P              G+P    G N    +LVSNLN + +    LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G  ++GK ++V  SK
Sbjct:  194 LDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.975e-35
Identity = 96/238 (40.34%), Postives = 132/238 (55.46%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGGMYAP------GARAVAFPQ------------MXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            +EVL Q+FS  G V KI+TF K+  FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRDFT  +LP    G+PS      + +   G M +P       A A+AFPQ            +           G +  PG +G      +LV+NLN D I    LF LF +YG++ R+K++ NK ++ALVQM D  QA+LA++ L G  L+GK L+   SK
Sbjct:  166 LEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 402          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.975e-35
Identity = 93/240 (38.75%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK---------------GRPSQSGYSEA----------GGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            ++VL Q+FS  G V KI+TF K+  FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+                  G  S S Y+ A           G+  P       P             G +  PG+ G  +   +LVSNLN +R+    LF LF +YG++ R+K+L NK ++ALV+M DG QA+LA+  L G  L GK +++  SK
Sbjct:  196 LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.075e-35
Identity = 95/238 (39.92%), Postives = 132/238 (55.46%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGGMYAP------GARAVAFPQ------------MXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            +EVL Q+FS  G V KI+TF K+  FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRDFT  +LP    G+PS      + +   G M +P       A A+AFPQ            +           G +  PG +G      +LV+NLN D I    LF LF +YG++ R+K++ NK ++ALVQM D  QA++A++ L G  L+GK L+   SK
Sbjct:  166 LEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSK 402          
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: ROD1_HUMAN (Regulator of differentiation 1 OS=Homo sapiens GN=ROD1 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.477e-34
Identity = 97/242 (40.08%), Postives = 130/242 (53.72%), Query Frame = 1
Query:    1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS---------------QSGYSEAGGMYAPGARAVAFPQM-------------XXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642
            +EVL Q+FS  G V KI+TF K+  FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRDFT  +LP    G+PS                S Y+ A G +AP   A+ FPQ                        G    PG +G      +LV+NLN D I    LF LF +YG++ R+K++ NK ++ALVQM D  QA+LA++ L G  L+GK L+   SK
Sbjct:  195 LEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAG-FAP---AIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSK 431          
The following BLAST results are available for this feature:
BLAST of DY270394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PTBP3_ARATH2.024e-9778.08Polypyrimidine tract-binding protein homolog 3 OS=... [more]
PTBP1_HUMAN2.201e-3841.74Polypyrimidine tract-binding protein 1 OS=Homo sap... [more]
PTBP1_BOVIN6.405e-3841.86Polypyrimidine tract-binding protein 1 OS=Bos taur... [more]
PTBP2_RAT5.995e-3640.72Polypyrimidine tract-binding protein 2 OS=Rattus n... [more]
PTBP2_MOUSE5.995e-3640.72Polypyrimidine tract-binding protein 2 OS=Mus musc... [more]
PTBP2_HUMAN5.995e-3640.72Polypyrimidine tract-binding protein 2 OS=Homo sap... [more]
ROD1_MOUSE2.975e-3540.34Regulator of differentiation 1 OS=Mus musculus GN=... [more]
PTBP1_RAT2.975e-3538.75Polypyrimidine tract-binding protein 1 OS=Rattus n... [more]
ROD1_RAT5.075e-3539.92Regulator of differentiation 1 OS=Rattus norvegicu... [more]
ROD1_HUMAN1.477e-3440.08Regulator of differentiation 1 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270394 ID=DY270394; Name=DY270394; organism=Citrus clementina; type=EST; length=1208bp
GTGGAAGTGCTGCTTCAAGTTTTTTCTCCTCATGGATTTGTGGAAAAGAT
CGTCACATTCCAGAAGTCAGCTGGATTTCAAGCACTTATCCAGTATCAAT
TACGTCCGAGTGCTGTTGTAGCTAGAAGTTCTCTTCAGGGTCGTAATATT
TATGATGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAGTT
ACAAGTGAACTACAATAATGAGCGATCAAGGGACTTCACAAATCCAAATC
TTCCTGCAGAACAGAAAGGCAGACCCTCACAATCTGGGTACAGCGAAGCA
GGAGGTATGTACGCTCCTGGAGCAAGGGCAGTTGCATTTCCACAGATGGC
CAATGCAGCTGCAATTGCAGCCGCCTTTGGCGGAGGTCTACCTCCTGGAA
TAACAGGGACAAATGATAGGTGTACAGTCTTAGTTTCCAATCTCAATTCT
GATAGAATAGATGAGGATAAGCTTTTTAACTTGTTCTCCCTCTATGGAAA
TATCATAAGAATCAAACTCCTCCGCAATAAACCAGATCATGCTCTTGTTC
AGATGGGCGATGGCTTCCAGGCTGAATTGGCGGTGCACTTTCTGAAAGGA
GCCTTACTATTTGGGAAGCGATTAAAAGTCAACTTCTCCAAACCTCCCAA
TAAAACTTCAAGGTGGCGACACCACTGAATACATGAAACCCAACTCTAAA
CCGCTTCATCCGTAATGCCCTAAAGAACTATCGGTACTGGCTGCTCCCCA
ACCAAGAAAAACCCCCCTTTCACTTTTAACCACAGAATGTTACCGAAAAG
GAATTTGCGAGCCCTCCGGAAAGAGAAAGGCCTTCCATTCCTAAACCACA
TCCCTTCGAAAATAAATGGAAAAAAAAAAGTCCAGTCCCCCATTGCAAAC
ATATGTATAGGCCCATAAAACTCCCCTTATTGATAGCCTAGTTTATCTAA
TCATAACGGGTTTAATTATTAATATAATTCTATTTCTCAATTATTAGACC
ATCATGAAAAATCCCATAAATCGTCTAGTTCACTATTTGACATGCTATAA
CTCTCCTCACGCGATCATGTGTAATTTACCTCACCTGAGCCTCGCCTCAT
TGTCAAACACTTCCCCACCCCCTCACACATCAACATCAACAGAACCCAAA
ATATACACATATCCTATCGAAACCCTCACAACCTGATCAGTCGCTTGCAA
TCCCATAT
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