DY270395

Overview
NameDY270395
Unique NameDY270395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1224
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig896 contig Ccv1_Contig896:275..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.266e-49
Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = 2
Query:   32 PIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            P+HYKGS FHRIIPSFM+Q            ESIYG+KF DENFKLKHTGPG+LSMAN+G DTNGSQFFITTVTTSWLDGRHVVFGKV+ GMDVVYK+EAEG+Q+GTPKSKVV+ADSGE
Sbjct:   80 PLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGE 198          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.160e-49
Identity = 95/118 (80.51%), Postives = 101/118 (85.59%), Query Frame = 2
Query:   35 IHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            +HYKGS+FHRIIPSFMLQ            ESIYGEKF DENFKLKHTGPG LSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKV++GMDVVYKVEAEG Q+GTPKSKVV+ DSGE
Sbjct:   84 LHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGE 201          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.658e-41
Identity = 77/119 (64.71%), Postives = 94/119 (78.99%), Query Frame = 2
Query:   32 PIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            P+H+KGS FHRIIP FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ TV T+WLDG+HVVFG+V+ G+D+V KVE  G  +GTPKS+ ++AD G+
Sbjct:   52 PLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQ 170          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.551e-39
Identity = 77/127 (60.63%), Postives = 94/127 (74.02%), Query Frame = 2
Query:    8 SGSGFPLLPIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            +G G    P+H+KGS FHRIIP+FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ TV T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+
Sbjct:   44 NGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQ 170          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.715e-38
Identity = 77/126 (61.11%), Postives = 93/126 (73.81%), Query Frame = 2
Query:   11 GSGFPLLPIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            G G    P+HYK S FHRIIP+FM+Q            ESIYG+KF DENFK+KH+ PGLLSMANAGP+TNGSQFFITTV TSWLDGRH VFG+V+ GMD+V  +E+ G Q+GTP     +++SGE
Sbjct:   71 GLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGE 196          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.896e-37
Identity = 74/126 (58.73%), Postives = 91/126 (72.22%), Query Frame = 2
Query:   11 GSGFPLLPIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            G G     +H+KGS FHRIIP FM+Q            ESI+GEKF DENFK KHTGPG+LSMAN G +TNGSQFF+ TV T+WLDG+HVVFGKV+ GMDVV  +E++G ++G P +  V+AD GE
Sbjct:   45 GKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGE 170          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.412e-37
Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            YKG +FHR+IP FMLQ            +SIYG KF DENF LKHTGPG LSMANAGP+TNGSQFFITT+  SWLDG+HVVFG+V  GMDVV  +E+ G  NGTP++K+++ + G+
Sbjct:   48 YKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQ 163          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.412e-37
Identity = 76/126 (60.32%), Postives = 86/126 (68.25%), Query Frame = 2
Query:   11 GSGFPLLPIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            G G   + +H+KGS FHRIIP FM+Q            ESIYG KF DENF LKHTGPG LSMANAGP+TNGSQFFI TV T WLDG HVVFG+V  GM VV K+E  G ++G P   V +AD GE
Sbjct:   63 GVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGE 188          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 9.412e-37
Identity = 74/118 (62.71%), Postives = 84/118 (71.19%), Query Frame = 2
Query:   35 IHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            +HYKGS FHRIIP FM Q            ESIYG KF DENFKLKHTGPG+LSMAN+GP+TNGSQFFI T  TSWLDG+HVVFGKV+ G +VV  +E  G   G P  +VV+ D GE
Sbjct:   53 LHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGE 170          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.229e-36
Identity = 71/116 (61.21%), Postives = 89/116 (76.72%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            +KGS+FHRIIP FM Q            +SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T   T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct:  184 FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
The following BLAST results are available for this feature:
BLAST of DY270395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CP19D_ARATH1.266e-4978.15Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
CP20A_ARATH2.160e-4980.51Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CYP7_CAEEL1.658e-4164.71Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP3_CAEEL1.551e-3960.63Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPIB_DICDI1.715e-3861.11Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYP2_CAEEL1.896e-3758.73Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIA1_RHIOR9.412e-3761.21Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYP1_CAEEL9.412e-3760.32Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
CP19C_ARATH9.412e-3762.71Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIE_HUMAN1.229e-3661.21Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270395 ID=DY270395; Name=DY270395; organism=Citrus clementina; type=EST; length=1224bp
ACAACCTTCTGGGAGTGGCTTCCCGCTCTTGCCAATCCACTACAAGGGAA
GTACGTTCCATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATTTC
ACTCTTGGTGATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTCCC
TGACGAAAATTTCAAACTGAAGCACACTGGCCCAGGGCTTTTGTCAATGG
CAAATGCTGGTCCAGACACCAATGGTTCACAATTCTTCATTACAACTGTG
ACAACTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTATC
GGGGATGGATGTAGTTTACAAGGTTGAAGCTGAAGGGAGGCAGAATGGCA
CTCCGAAGAGCAAAGTCGTCGTTGCAGACAGCGGTGAACTTCCTCTGTGA
TTTCCCCCATAATTATATAATTACGCTATACACCTTTTTAGTCCTCTCGT
CTTTTCAACCTTCATGAAGATACTCACAATTTGCCTATTTTATCATGTAA
TAAACATTTTCAATATGTCCTAGGTTGTTTGCCAAACTGGTGCCTCATTT
TCAAGGGGCATCCTTTCTCTGACCATCATAAAATAATAAAATGTACCCTA
TTTTCTTGGTCTATGTGGGCGCAGAAAAAAAGGCCCGGCCCATGGATTTT
GTAGAAACTCAAAGGCTATCCACAGACAAAAAAAAAACGTTTATCTAGAT
TTTGATATAATATCTCATGACTAAACGTATGCCGGTCGCTCCTGCTGCCT
CCTTTTTTTTCTTGATTCTCTATTCCTTTTTTTTTGCCACACCATCCTAC
TACTATACACTCCTATCCTCCTGTTACATATCACTACCACTAACTGACTC
ACTTTCCAAGCTCAAACATACACCAACTCCTATATTAATATCACATATAA
TATCCTAATCAGTAAACAAAAATTTTGACTCAAAGTTCACGGTATACATC
CACATATCGAAATATAAGAAATAAAAAGTTGTAGTTCTCCTACCCCACTC
CTGGTGCACCACTAGTTCTTTTTGTCGGACCTGCCTTCTATAACCCAGCC
TTGGCAGATGTGGGGTTCTTAGCCTTTGGTACCTGACGCCGTAGGGCTGT
CAGATACACTATACTCGCCTCCCATCATTTGATAGATTTGGAATTACATA
CGAACTGCAAGGTGTACTTTCATCTCCCATCCCCCCCCCCTGTCTACTAA
CACCATCCTCGCACCGCAATGTCA
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