DY270396

Overview
NameDY270396
Unique NameDY270396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1109
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10 contig Ccv1_Contig10:76..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270396 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.481e-86
Identity = 153/210 (72.86%), Postives = 180/210 (85.71%), Query Frame = 1
Query:    1 QFTDLDGTELVRLASRCLQYEPRERPNPKSLVTALSPLQKETEVPSHVLMGIPHSASVSPLSPLGEACSRRDLTAIHEILEKISYKDDEGVANELSFQMWTDQMQETLNSKKKGDVAFRQKDLKDAIECYTQFIDAGTMVSPTVYARRSLCYLMSDMPQDALNDAMQAQIISPIWHIASYLQAAALSAMGMENEAQVALKEGTTLEAKKN 630
            QF+  DGTEL+RLASRCLQYEPRERPNPKSLV+A+ PLQK+ E+ SH L+G+P+SA+ + LSPLGEAC R DLTAIHEI+EK+ YKDDEG   ELSFQMWTDQMQ+TL  KKKGD AFR KD   AIECY+QFI+ GTM SPTV+AR+SLCYLM+DMP++ALN+AMQAQ+ISP WHIASYLQA ALSA+G ENEA  ALK+G  LE+K+N
Sbjct:  276 QFSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQLLGVPNSATTTALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKRN 485          
BLAST of DY270396 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 6.692e-63
Identity = 121/214 (56.54%), Postives = 154/214 (71.96%), Query Frame = 1
Query:    1 QFTDLDGTELVRLASRCLQYEPRERPNPKSLVTALSPLQKETEVPSHVLMGIPH-----SASVSPLSPLGEACSRRDLTAIHEILEKISYKDDEGVANELSFQMWTDQMQETLNSKKKGDVAFRQKDLKDAIECYTQFIDAGTMVSPTVYARRSLCYLMSDMPQDALNDAMQAQIISPIWHIASYLQAAALSAMGMENEAQVALKEGTTLEAKK 627
            +F+  + T +V LAS+CLQYEPRERPN K LV  L+PLQ +++VPS+V++GI       S    PLSPLGEACSR DLTAIH+IL    Y+DDEG  NELSFQ WT QM++ L+++K+GD +FR+KD K AI+CY+QFID GTMVSPTV+ RRSLCYL+ D P  AL DAMQAQ + P W  A Y+Q+ AL+ + M  +A   L E   LE K+
Sbjct:  293 KFSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGT-NELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKR 505          
BLAST of DY270396 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.312e-42
Identity = 93/213 (43.66%), Postives = 134/213 (62.91%), Query Frame = 1
Query:    1 QFTDLDGTELVRLASRCLQYEPRERPNPKSLVTALSPLQKETEVPSHVLMGIPH----SASVSPLSPLGEACSRRDLTAIHEILEKISYKDDEGVANELSFQMWTDQMQETLNSKKKGDVAFRQKDLKDAIECYTQFIDAGTMVSPTVYARRSLCYLMSDMPQDALNDAMQAQIISPIWHIASYLQAAALSAMGMENEAQVALKEGTTLEAKK 627
            +F+  +   + +LAS+CL+YE +E PN K +V  L  LQ  TE PS+ ++ + +    ++S S LSPLGEAC R DL +IH IL    Y DD+ +  ELSF+ W  +++E  + ++ GD AF ++D K AI CY+QF++  ++V P+VYARRSL YL  D P+ AL D M AQ + P W  A YLQ+ AL+ + M  ++   LKE   LE KK
Sbjct:  254 KFSIDEANVVYKLASQCLKYEGQESPNTKEIVATLETLQTRTEAPSYEVVEMTNQEKDASSSSNLSPLGEACLRMDLASIHSILVLAGYDDDKDII-ELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
The following BLAST results are available for this feature:
BLAST of DY270396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y5126_ARATH1.481e-8672.86Probable serine/threonine-protein kinase At5g41260... [more]
Y4523_ARATH6.692e-6356.54Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH1.312e-4243.66Probable inactive receptor-like kinase SSP OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YH21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270396 ID=DY270396; Name=DY270396; organism=Citrus clementina; type=EST; length=1109bp
CAATTTACTGATCTTGATGGGACTGAGTTAGTACGTTTGGCTTCTCGGTG
TTTACAATATGAACCCCGAGAACGCCCAAATCCAAAGTCATTAGTGACTG
CTTTAAGTCCTCTTCAGAAAGAAACTGAGGTTCCTTCTCATGTCTTGATG
GGTATTCCACACAGTGCTTCTGTCTCTCCCCTGTCCCCACTTGGTGAAGC
CTGTTCAAGAAGAGATTTGACTGCCATACACGAGATCTTGGAGAAAATAA
GCTACAAAGATGATGAAGGAGTAGCAAATGAGCTCTCCTTCCAAATGTGG
ACTGATCAAATGCAAGAAACATTAAATTCCAAGAAAAAGGGTGATGTTGC
CTTCAGACAGAAAGATTTAAAAGATGCAATTGAGTGTTACACACAGTTCA
TTGATGCTGGAACCATGGTTTCACCGACAGTTTACGCACGGCGTAGTTTG
TGTTATCTCATGAGTGACATGCCTCAAGACGCTCTGAATGATGCAATGCA
AGCCCAAATCATTTCCCCCATCTGGCACATTGCATCTTATCTTCAGGCTG
CTGCTCTTTCTGCCATGGGAATGGAGAATGAAGCTCAAGTGGCACTCAAG
GAGGGCACAACTCTTGAAGCAAAGAAGAATTCCACTGCTGGACAAAAGTG
AGAAAGCAATGTGTCCCAAGTAGCCTTTTACTAGTATCATCTTGGTCATC
AGAAAGATGAAACTTGGCATTGATTGTGATTCAGGCTATCCTTCCGGCCA
GCTAATCTCGGAATTAAAGGGTTCAAACCTATCAAAGTAATTTTTTTCCC
CGTTAATTTTAAATCCCGTTTAATGGTAATAAAATCCCATAATGGGTTTT
GAAGTGGTTAATGAACAAAAGCAAGGGATGAAGGAAAATAGCCCGTTCCT
TTTTCCTCCGTGGGGGGGCCGTTAAAAAATTTCCTTTTCCTTCTTTTGGG
CTCATTCCATTACACTTTGTTCTATGTGTTGGTACCCCTTTTTTTCCTCT
TCCCTTTTTAAATACAACGGAGTCTTCACTCCTCCCCAACAAAAACAACC
TGCTGCGACTAAACAACACTCCTCTCTAATACACTCCCACTTTTACCGTA
CCATCATCT
back to top