DY270399

Overview
NameDY270399
Unique NameDY270399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1013
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270399 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.214e-22
Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 2
Query:   44 ATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHP 472
            AT +  L+ A  S S      ++   P+LD  G+++++ ++YY++S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G P
Sbjct:    4 ATAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEP 145          

HSP 2 Score: 42.3578 bits (98), Expect = 6.214e-22
Identity = 19/37 (51.35%), Postives = 22/37 (59.46%), Query Frame = 3
Query:  471 PGAETLLNWFKLEKIGNFPGIYKIAHCPSLCQSCVKL 581
            PG  TL +WFK+EK G     YK   CPS+C SC  L
Sbjct:  145 PGPNTLCSWFKIEKAGVLG--YKFRFCPSVCDSCTTL 179          
BLAST of DY270399 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.025e-19
Identity = 47/149 (31.54%), Postives = 73/149 (48.99%), Query Frame = 2
Query:   35 ISLATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHP 472
            +SL+      +LA A+N LL     S P P+LD+ G K+ +   YYIV  +                   CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+P
Sbjct:    7 LSLSFFFVSALLAAAANPLLS-AADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNP 152          

HSP 2 Score: 42.3578 bits (98), Expect = 2.025e-19
Identity = 20/45 (44.44%), Postives = 28/45 (62.22%), Query Frame = 3
Query:  453 GDLMVTPGAETLLNWFKLEKIGNFPGIYKIAHCPSLCQSC-VKLG 584
            G +   PG ET+ +WFK+E+     G YK+  CP++C SC VK G
Sbjct:  146 GGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCG 189          
BLAST of DY270399 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.972e-11
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  116 PEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGH 469
            P+P++D+ G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGY 116          
The following BLAST results are available for this feature:
BLAST of DY270399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC6.214e-2231.7221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.025e-1931.54Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA3.972e-1135.54Latex serine proteinase inhibitor OS=Carica papaya... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YH24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270399 ID=DY270399; Name=DY270399; organism=Citrus clementina; type=EST; length=1013bp
ACAGATATACCTTTTTGAAAACAACAAAATGAAGATTTCATTAGCAACAA
CACTCTCTTTCCTTATCCTTGCCTTGGCCTCAAACTCTTTGTTGGTCTTG
GGCACCTCATCAGTTCCTGAACCTCTCCTTGATGTCCACGGAAACAAGGT
CGAATCCACCCTTAAGTACTACATAGTCTCAGCCATCTGGGGAGCTGGCG
GTGGTGGAGTTAGCCTACACGGTGGCAGAAACGGATATTGTCCGCTGGAC
GTTATCCAGTTACCTTCTGATATGCAAAATGGAATCGAATTAACACTGTC
ACCGTATAACAATTCTACAATTGTCCGAGAATCCACTGATCTCAACTTGA
GATTCTCAGTGTTGCTATCTGGACGTGACTATTGTAACGAACAACCGTTG
TGGAAAGTTGATAATTATGACGCGGCATCAGGCAAATGGTTTATAACAAC
CGGGGGACTTGATGGTCACCCCTGGAGCTGAAACTTTGCTAAATTGGTTT
AAACTTGAAAAAATTGGAAATTTTCCAGGTATATACAAAATCGCTCATTG
TCCATCCCTTTGCCAGTCTTGTGTCAAACTCGGCCAACAACATGGGCCCG
TTCGATTAAGGAAGGCGATTTACGTCCGGGTACTTGGTTTATGATTATTA
CCCGTGATTTCTTGTTGCGATAATCCCCCGCCCCCCCACCACCCCAATTT
TTTAATTTTTAATTTATTTTATCCCTCTCTCCAACACTACACACACCACC
CACCTAACCACTCTACACCCACCCCCCTACCCCCCCACAAACACACAATA
ACTATAAACATAACTCCAAACGCTCTCCGCGCACCTTGAACCACAACTCA
ACCACTCCCCCCCACACCAATCACATCCAAACATCAAGTACCTACACACT
TACGCACCACCGCCACACACTATCATACAACAACACACCTCCCACGCACC
ACTACCCTACACTCCCCACCCCACAACCAACAAATAAAACCCACCCCCAC
CACACCACCCCCC
back to top