DY270400

Overview
NameDY270400
Unique NameDY270400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1115
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3604 contig Ccv1_Contig3604:1..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.456e-57
Identity = 108/175 (61.71%), Postives = 140/175 (80.00%), Query Frame = 1
Query:  259 MGALVSKF---WFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKW 774
            MG+ +S F   W   F   +YK+IIVGL+ AGKTTTLYKL L EVV+T PTVGSN+EE VY+NIR   WD+GGQ+ LR++W  YY  T AVI+VIDSTDRAR++++K+ELF++L HE+L++S++LI+ANKQDLKDAM+P E++  LSLHSI++HD+HIQ C ALTG GL  GL W
Sbjct:    1 MGSSLSIFASIWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDW 175          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 6.115e-56
Identity = 103/177 (58.19%), Postives = 136/177 (76.84%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRV 789
            MG + +K W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V KN  F  WD+GGQE LR+SW TYY  T  +I+V+DS DR R++I K+EL+R+L HEDL+++ VLIFANKQD+K  MT AEI+  L+L SI++H WHIQ C ALTG+GL +GL+W + R+
Sbjct:    1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 6.115e-56
Identity = 103/177 (58.19%), Postives = 136/177 (76.84%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRV 789
            MG + +K W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V KN  F  WD+GGQE LR+SW TYY  T  +I+V+DS DR R++I K+EL+R+L HEDL+++ VLIFANKQD+K  MT AEI+  L+L SI++H WHIQ C ALTG+GL +GL+W + R+
Sbjct:    1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 7.987e-56
Identity = 104/177 (58.76%), Postives = 136/177 (76.84%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRV 789
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR+SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+++ +LIFANKQD+K+ MT AEI+  L L SI++H WHIQ C ALTG+GL +GL+W   R+
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 7.987e-56
Identity = 104/177 (58.76%), Postives = 136/177 (76.84%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRV 789
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR+SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+++ +LIFANKQD+K+ MT AEI+  L L SI++H WHIQ C ALTG+GL +GL+W   R+
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.362e-55
Identity = 104/177 (58.76%), Postives = 135/177 (76.27%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRV 789
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+++ +LIFANKQD+K+ MT AEI+  L L SI++H WHIQ C ALTG+GL +GL+W   R+
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.779e-55
Identity = 104/177 (58.76%), Postives = 135/177 (76.27%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRV 789
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR+SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+++ +LIFANKQD+K  MT AEI+  L L SI++H WHIQ C ALTG+GL +GL+W   R+
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 5.014e-50
Identity = 98/181 (54.14%), Postives = 127/181 (70.17%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRVTGKA 801
            MG   SK +  LF  K+ +I++VGLD AGKTT LYKL LGEV+TT PT+G NVE + YKNI F  WDVGGQ+R+R+ W  YYR T  VI VIDS DR+RI   ++ + R+L  ++L+ +V L+FANKQDL +AM+ AEIT  L LHSIRN  W IQ   A +G+GL EGL+W S  +  ++
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.117e-49
Identity = 97/178 (54.49%), Postives = 129/178 (72.47%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRVT 792
            MG L++K    +F  +++K+IIVGLDNAGKTT LY+    EVV T  T+GSNVEE+V +   F  WD+GGQE LR++W TYY     VI+VIDSTDR R+   ++EL+++L HE LQ + VLIFANKQD+KD+MT AEI+  L+L +I++H WHIQ C ALTG+GL  GL+W   + T
Sbjct:    1 MGQLIAKL-MRIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGLQWMQAQAT 177          
BLAST of DY270400 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 1.459e-49
Identity = 95/181 (52.49%), Postives = 128/181 (70.72%), Query Frame = 1
Query:  259 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQQSVVLIFANKQDLKDAMTPAEITHALSLHSIRNHDWHIQPCRALTGDGLGEGLKWNSQRVTGKA 801
            MG LV+     LF  K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F  WDVGGQ+++R  W  Y++ T  +I V+DS DR R++  ++EL R+L  ++L+ +V+L+FANKQDL +AM PAEIT  L LHS+RN  W+IQ   A +GDGL EGL W S  +  ++
Sbjct:    1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181          
The following BLAST results are available for this feature:
BLAST of DY270400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
ARL5_DICDI1.456e-5761.71ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL5B_MOUSE6.115e-5658.19ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN6.115e-5658.19ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL5A_RAT7.987e-5658.76ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN7.987e-5658.76ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_MOUSE1.362e-5558.76ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_BOVIN1.779e-5558.76ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARF2_YEAST5.014e-5054.14ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARL5C_MOUSE1.117e-4954.49ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARF_DUGJA1.459e-4952.49ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270400 ID=DY270400; Name=DY270400; organism=Citrus clementina; type=EST; length=1115bp
CACAAATAAATAATTAGAGAATTGTCTCAAATCTCAATCGCGATCACTTT
CACATAAAACAGATCTCTCCATCGCAATTCGCAAAATCCAGAGGTTTCAA
TCCCCTGCATCGCAAATCACTCCCTTCATCATCAGCTCCCATCCATCCAC
CCCGCCCATTTCATCATCTCCCAGTCTCTCCATCCAGATTCGATCTCAAT
TCACTCTCACGTCGATCCTTCACGGAATCGTTTTTTAGGGATTTAAAGAG
GGAAAGGTATGGGAGCATTGGTATCGAAGTTTTGGTTCATGTTGTTTCCT
GGAAAGGATTATAAAATTATAATCGTGGGGTTGGATAATGCTGGCAAAAC
GACGACGCTTTACAAGTTGCACTTGGGAGAGGTGGTCACTACTCACCCTA
CTGTTGGCAGCAACGTTGAAGAGCTTGTTTACAAAAACATTCGATTCGAG
GCCTGGGATGTTGGTGGACAAGAAAGGCTGCGGACATCATGGGCAACTTA
TTATCGTGGAACCCATGCTGTTATTGTGGTTATAGACAGTACTGATAGAG
CCAGGATTTCCATTATGAAGGACGAACTATTCAGGCTTCTTGGGCATGAG
GACCTACAACAGTCTGTTGTACTTATATTCGCAAATAAACAGGATCTCAA
AGATGCTATGACCCCAGCTGAAATCACCCATGCCCTTTCTCTTCACAGCA
TCAGGAATCATGATTGGCACATTCAACCCTGCCGTGCACTTACTGGAGAT
GGGCTGGGTGAGGGTCTAAAGTGGAATAGCCAGCGAGTTACCGGGAAAGC
CCCCAGTTGGAAAAAGCCGAAAAATAAATTTCCATAAAAAGGTTCCCCCT
CCCACCTACAGGGGTCCGGAGGATCAAGTTAAAAAATTTGGTTTTCTGGC
ACCTGTAACCCCCAAACAAACCCCTTCCTGAAAAAATCCCGCGAATGGTT
TTTCCCCTTTTTAATTTTGCCCCCAAACTTTTTATCTCTTTTAACCACAA
AGAAACATTTTCTCTACCCCCCCCCATCCCCCCCCTTTCAAGGGAGAGCG
CCAAAAAAAAAAAAATTCCCTCTCGTAAACACTTTCCTGGAAAAAAACTC
CTTTATTTGTTTTAC
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