DY270410

Overview
NameDY270410
Unique NameDY270410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14988 contig Ccv1_Contig14988:5..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 9.579e-76
Identity = 136/168 (80.95%), Postives = 151/168 (89.88%), Query Frame = 3
Query:  183 QKNSMYIEQNDPE---GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKCYTSNNPLM 677
            +K SM++EQ+ PE   GD  K+F D+DGR KRTGTW+T SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQLCGLAQYGNLIG+TIGYTITASISMVAVKRSNCF + GH+VKC TSN P M
Sbjct:    3 KKKSMFVEQSFPEHEIGDTNKNF-DEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQLCGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFM 169          

HSP 2 Score: 29.261 bits (64), Expect = 9.579e-76
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  686 FAGIQIVLNQIPNFSKLSRVS 748
            FA IQI+L+QIPNF  LS +S
Sbjct:  172 FAIIQIILSQIPNFHNLSWLS 192          
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP1_ARATH (Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.633e-65
Identity = 113/145 (77.93%), Postives = 129/145 (88.97%), Query Frame = 3
Query:  243 LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKCYTSNNPLM 677
            +D+DGR KRTGTW+TASAHIITAVIGSGVLSLAWAIAQLGW+AG ++L+ FSFITY+TST+L+DCYR+PDPVTGKRNYTYMDVVR+ LGGR VQLCG+AQYGNLIGVT+GYTITASIS+VAV +SNCF   GH   C  SN P M
Sbjct:   29 VDEDGREKRTGTWLTASAHIITAVIGSGVLSLAWAIAQLGWIAGTSILLIFSFITYFTSTMLADCYRAPDPVTGKRNYTYMDVVRSYLGGRKVQLCGVAQYGNLIGVTVGYTITASISLVAVGKSNCFHDKGHTADCTISNYPYM 173          

HSP 2 Score: 29.261 bits (64), Expect = 8.633e-65
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  686 FAGIQIVLNQIPNFSKLSRVS 748
            F  IQ++L+QIPNF KLS +S
Sbjct:  176 FGIIQVILSQIPNFHKLSFLS 196          
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.330e-61
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 3
Query:  222 GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKCYTSNNPLM 677
            GD     +DDDGR KRTGT+ TASAHIITAVIGSGVLSLAWAIAQLGWVAG  VL+AF+ ITYYTSTLL+DCYRSPD +TG RNY YM VVR+ LGG+ VQLCG+AQY NL+GVTIGYTITASIS+VA+ +SNC+   GH  KC  SN P M
Sbjct:   13 GDAAVKSVDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIITYYTSTLLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPYM 164          

HSP 2 Score: 29.261 bits (64), Expect = 9.330e-61
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  680 SSFAGIQIVLNQIPNFSKLSRVS 748
            ++F  +QI+L+Q+PNF KLS +S
Sbjct:  165 AAFGIVQIILSQLPNFHKLSFLS 187          
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.485e-55
Identity = 102/144 (70.83%), Postives = 120/144 (83.33%), Query Frame = 3
Query:  246 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKCYTSNNPLM 677
            DDDGR KR+GT  TASAHIITAVIGSGVLSLAWAI QLGW+AGP V++ FSF+TYY+STLLSDCYR+ DPV+GKRNYTYMD VR+ LGG   ++CGL QY NL G+T+GYTI ASISM+A+KRSNCF  +G    C+ S+NP M
Sbjct:   12 DDDGRLKRSGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPTVMLLFSFVTYYSSTLLSDCYRTGDPVSGKRNYTYMDAVRSILGGFRFKICGLIQYLNLFGITVGYTIAASISMMAIKRSNCFHESGGKNPCHMSSNPYM 155          
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 6.572e-54
Identity = 102/144 (70.83%), Postives = 119/144 (82.64%), Query Frame = 3
Query:  246 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKCYTSNNPLM 677
            DDDGR KRTGT  TASAHIITAVIGSGVLSLAWAIAQLGW+AGPAV++ FS +T Y+STLLSDCYR+ D V+GKRNYTYMD VR+ LGG   ++CGL QY NL G+ IGYTI ASISM+A+KRSNCF ++G    C+ S+NP M
Sbjct:   39 DDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSLVTLYSSTLLSDCYRTGDAVSGKRNYTYMDAVRSILGGFKFKICGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSSNPYM 182          
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP3_ARATH (Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 3.732e-53
Identity = 96/146 (65.75%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  240 FLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKCYTSNNPLM 677
            +LDDDG+ KRTG+  TASAHIITAVIGSGVLSLAWA AQLGW+AGP V++ FS +TY+TS+LL+ CYRS DP++GKRNYTYMD VR++LGG  V LCG+ QY N+ GV IGYTI ++ISM+A+KRSNCF ++G    C+ ++NP M
Sbjct:   21 YLDDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFSAVTYFTSSLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMNSNPYM 166          

HSP 2 Score: 24.6386 bits (52), Expect = 3.732e-53
Identity = 9/27 (33.33%), Postives = 18/27 (66.67%), Query Frame = 2
Query:  656 HIKQSTHESSFAGIQIVLNQIPNFSKL 736
            H+  + +  +F  +QI+ +QIP+F +L
Sbjct:  159 HMNSNPYMIAFGLVQILFSQIPDFDQL 185          
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.314e-49
Identity = 90/147 (61.22%), Postives = 113/147 (76.87%), Query Frame = 3
Query:  237 DFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKCYTSNNPLM 677
            D  DDDGR KRTGT  TASAHIITAVIGSGVLSLAWA+AQ+GW+ GP  ++ FSF+T+YTSTLL  CYRS D VTGKRNYTYMD + ++LGG  V++CG+ QY NL G  IGYTI ++IS+VA++R++C    G +  C+ + N  M
Sbjct:   18 DSFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWIGGPVAMLLFSFVTFYTSTLLCSCYRSGDSVTGKRNYTYMDAIHSNLGGIKVKVCGVVQYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVNGNVYM 164          
BLAST of DY270410 vs. ExPASy Swiss-Prot
Match: AAP7_ARATH (Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.057e-31
Identity = 74/163 (45.40%), Postives = 100/163 (61.35%), Query Frame = 3
Query:  252 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGK-RNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFPRTGHHVKC-YTSNNPLMNHPLLASKLFLTKYQTFLN 734
            D    RTGT  TA AHIIT VIG+GVLSLAWA A+LGW+AGPA L+AF+ +T  ++ LLSDCYR PDP  G  R  +Y   V+  LG ++  +CG+  Y +L G  I YTI  +    A+ +SNC+ R GH+  C Y  NN         +++F+++   F N
Sbjct:   21 DSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHN 183          
The following BLAST results are available for this feature:
BLAST of DY270410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AAP6_ARATH9.579e-7680.95Amino acid permease 6 OS=Arabidopsis thaliana GN=A... [more]
AAP1_ARATH8.633e-6577.93Amino acid permease 1 OS=Arabidopsis thaliana GN=A... [more]
AAP8_ARATH9.330e-6173.03Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
AAP4_ARATH3.485e-5570.83Amino acid permease 4 OS=Arabidopsis thaliana GN=A... [more]
AAP2_ARATH6.572e-5470.83Amino acid permease 2 OS=Arabidopsis thaliana GN=A... [more]
AAP3_ARATH3.732e-5365.75Amino acid permease 3 OS=Arabidopsis thaliana GN=A... [more]
AAP5_ARATH8.314e-4961.22Amino acid permease 5 OS=Arabidopsis thaliana GN=A... [more]
AAP7_ARATH2.057e-3145.40Probable amino acid permease 7 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YI11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270410 ID=DY270410; Name=DY270410; organism=Citrus clementina; type=EST; length=1243bp
GTTTCTTCCCTACCCTGCTACTACAGGTGCCACACACAACAACACTGCCC
CACTGACCTTGCAGCATAAGCTGCTGCTACTGCTACTCATTTTTAATTAA
TCATATCTCCTAATTTCTCAACTTCTCAGCAACCCCATTTCAGCTTCTTC
TACTACTCAACAGAGACATGGCGATGGAGATGCAAAAGAACAGCATGTAT
ATCGAACAAAATGACCCTGAAGGTGATATCCGCAAAGACTTTCTGGATGA
TGATGGTCGAGCAAAAAGAACTGGGACTTGGGTGACTGCAAGTGCTCATA
TTATCACGGCAGTGATTGGCTCTGGAGTACTGTCTCTGGCATGGGCCATT
GCTCAGCTTGGCTGGGTAGCTGGCCCAGCTGTTCTCATGGCTTTCTCATT
CATCACCTATTACACCTCTACTTTGCTTTCCGATTGTTACCGGTCTCCTG
ATCCCGTCACCGGCAAGCGAAACTACACCTACATGGATGTAGTCAGAGCT
AGCCTAGGAGGAAGGAGCGTCCAGCTATGTGGATTGGCTCAGTATGGAAA
TCTCATTGGAGTTACGATTGGTTATACTATCACTGCATCTATTAGCATGG
TGGCTGTTAAAAGGTCAAATTGCTTCCCCAGAACTGGTCATCATGTCAAG
TGCTACACATCAAACAATCCACTCATGAATCATCCTTTGCTGGCATCCAA
ATTGTTCTTAACCAAATACCAAACTTTTCTAAACTCTCCCGGGTCTCATT
CCCACTGCCATAATGGCTTTTGACTTATCCTCCTTTGAATTGGCCTCCCC
AAAAACAAAATTATTAGTGAATGGGCCGCTAGCCCAACCCTAACAGGAAA
AACAAAAATGAGTAAACGTACCAACACCAAAAAACGATTGGGAAAACTTT
TTAAGCAACTGGAACTCTTCTTTCTCTTATCTTATTCATAAGGATTTATA
GACCATCTACGTATACCAATTACCTATCCTCCCGACAACTCCTTACATGA
ATATTGCCATCTCACCTTTTGGTGCCACAAAACTAACATCTTGTCTTTAC
CATCATGTTTCTTCCTATAGATGCACGAATACATAATACCGAAAATAGCT
CTTTGCCGTGTGACTACTTCCTCATACTCACATAACTAACTAAACCACAC
CCCATAATGTTACGACTTATATTATCCCTCAAATAGTACACTACCTCATC
CCATTATATCTTATTACACCAACCTCTAATAATAAATAAATCT
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