DY270413

Overview
NameDY270413
Unique NameDY270413
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1320
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270413_ssr969 microsatellite DY270413_ssr969:969..978. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3612 contig Ccv1_Contig3612:1..1320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: YDHE_SCHPO (Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces pombe GN=SPAC6G9.14 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.100e-29
Identity = 63/147 (42.86%), Postives = 96/147 (65.31%), Query Frame = 3
Query:    6 VQLLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            +Q +I+ + +  Q+S +  AL+P  + L KDLNGNHV+Q+CL   S ED +FIF A  +  +D++TH+HGCCV+QRC  H+     ++L+  I  +   L QD FGNYV+QY++EL  P+ +  ++S F      L TQKFS++V+E
Sbjct:  433 LQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVME 579          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUF4_YEAST (Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae GN=PUF4 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.150e-27
Identity = 66/151 (43.71%), Postives = 91/151 (60.26%), Query Frame = 3
Query:    6 VQLLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYII----ELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            +Q LIE +KT ++  +V  +L+P  + L KDLNGNHV+Q+CLQ L  E+ +FIF A +  C+DIATH+HGCCVLQRC+ H      D L  ++      L  DPFGNYVVQYII    E      +  ++   K   + L   KF ++V+E
Sbjct:  653 LQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIE 803          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: YAD3_SCHPO (Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces pombe GN=SPAC4G8.03c PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.901e-22
Identity = 59/183 (32.24%), Postives = 103/183 (56.28%), Query Frame = 3
Query:    6 VQLLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVEN-----GPGILEEGDLKLPIELPFSAQLSNSCSNNH 539
            +Q +I+ L + +Q+SL+   + P    L  D NG HVLQ+C+     E  E +F +  +  + +AT++HGCC+LQRC+  + G  +++L+  I K+   L Q+ +GNY+VQ+++EL I   +  ++ +F G+   L  QKFS++ +E       P   E+  L+  +  P   QL + C  N+
Sbjct:  552 MQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQ-MLQEFLSFPNIEQLLDDCYANY 733          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUM2_MOUSE (Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.967e-19
Identity = 49/149 (32.89%), Postives = 87/149 (58.39%), Query Frame = 3
Query:    3 VVQLLIETLKTRQQV-SLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            V+Q  +E++ + QQV S +   L    L  +KD NGNHV+Q+C++C+  +  +FI  A       ++TH +GC V+QR + H        ++ E+ ++   L QD +GNYV+Q+++E   P   + ++S+ +G  + L   KF+++VVE
Sbjct:  815 VIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUM2_HUMAN (Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.967e-19
Identity = 49/149 (32.89%), Postives = 87/149 (58.39%), Query Frame = 3
Query:    3 VVQLLIETLKTRQQV-SLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            V+Q  +E++ + QQV S +   L    L  +KD NGNHV+Q+C++C+  +  +FI  A       ++TH +GC V+QR + H        ++ E+ ++   L QD +GNYV+Q+++E   P   + ++S+ +G  + L   KF+++VVE
Sbjct:  815 VIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUM1_PONAB (Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.722e-19
Identity = 47/148 (31.76%), Postives = 88/148 (59.46%), Query Frame = 3
Query:    3 VVQLLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            V+Q  +E + + QQ  +V+  L    L  +KD NGNHV+Q+C++C+  +  +FI  A       ++TH +GC V+QR + H +      ++ E+ ++   L QD +GNYV+Q+++E   P   + ++++ +G+ + L   KF+++VVE
Sbjct:  937 VIQKALEFIPSDQQNEMVRE-LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1083          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUM1_HUMAN (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 5.722e-19
Identity = 47/148 (31.76%), Postives = 88/148 (59.46%), Query Frame = 3
Query:    3 VVQLLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            V+Q  +E + + QQ  +V+  L    L  +KD NGNHV+Q+C++C+  +  +FI  A       ++TH +GC V+QR + H +      ++ E+ ++   L QD +GNYV+Q+++E   P   + ++++ +G+ + L   KF+++VVE
Sbjct:  937 VIQKALEFIPSDQQNEMVRE-LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1083          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUM1_MOUSE (Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.174e-18
Identity = 47/149 (31.54%), Postives = 88/149 (59.06%), Query Frame = 3
Query:    3 VVQLLIETLKTRQQV-SLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            V+Q  +E + + QQV + +   L    L  +KD NGNHV+Q+C++C+  +  +FI  A       ++TH +GC V+QR + H +      ++ E+ ++   L QD +GNYV+Q+++E   P   + ++++ +G+ + L   KF+++VVE
Sbjct:  938 VIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUM1_CHICK (Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.174e-18
Identity = 47/149 (31.54%), Postives = 87/149 (58.39%), Query Frame = 3
Query:    3 VVQLLIETLKTRQQV-SLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            V+Q  +E +   QQV + +   L    L  +KD NGNHV+Q+C++C+  +  +FI  A       ++TH +GC V+QR + H +      ++ E+ ++   L QD +GNYV+Q+++E   P   + ++++ +G+ + L   KF+++VVE
Sbjct:  938 VIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086          
BLAST of DY270413 vs. ExPASy Swiss-Prot
Match: PUM_DROME (Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.079e-17
Identity = 47/148 (31.76%), Postives = 82/148 (55.41%), Query Frame = 3
Query:    3 VVQLLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEFIFYAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLLTQKFSNHVVE 446
            V+Q  +E++   QQ  +V   L    L  +KD NGNHV+Q+C++C+     +FI  A       ++TH +GC V+QR + H        ++ E+ ++   L QD +GNYV+Q+++E       + L++  +G  + L   KF+++VVE
Sbjct: 1200 VIQKALESISPEQQQEIVHE-LDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVE 1346          
The following BLAST results are available for this feature:
BLAST of DY270413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
YDHE_SCHPO6.100e-2942.86Pumilio domain-containing protein C6G9.14 OS=Schiz... [more]
PUF4_YEAST1.150e-2743.71Pumilio homology domain family member 4 OS=Sacchar... [more]
YAD3_SCHPO1.901e-2232.24Pumilio domain-containing protein C4G8.03c OS=Schi... [more]
PUM2_MOUSE1.967e-1932.89Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=... [more]
PUM2_HUMAN1.967e-1932.89Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=... [more]
PUM1_PONAB5.722e-1931.76Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=... [more]
PUM1_HUMAN5.722e-1931.76Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=... [more]
PUM1_MOUSE2.174e-1831.54Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=... [more]
PUM1_CHICK2.174e-1831.54Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV... [more]
PUM_DROME1.079e-1731.76Maternal protein pumilio OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270413 ID=DY270413; Name=DY270413; organism=Citrus clementina; type=EST; length=1320bp
GGGTGGTGCAGCTTTTGATTGAGACTCTAAAAACTAGGCAGCAGGTTTCG
CTGGTCAAAGCAGCACTCAAACCTGGCTTTCTTGATCTTATTAAGGATCT
GAATGGCAATCATGTTTTACAACGCTGCTTGCAATGCCTTAGCAATGAAG
ATAATGAGTTTATTTTTTATGCTGCTGCAAAGTTTTGCGTTGACATAGCT
ACTCATCAGCATGGCTGTTGTGTATTGCAACGATGCATTGCTCATTCCAT
TGGGAGACATCGGGATAAGTTGATCACTGAAATTTCCAAGAATGGGCGTC
ACCTTGCTCAAGATCCTTTTGGAAATTATGTTGTACAATATATAATAGAG
CTAAAGATCCCTTCTGTCAGCGCCAACTTGCTGTCGCAGTTCAAAGGACA
TTATGTGCATCTCCTCACACAAAAATTCAGCAACCACGTGGTTGAAAATG
GCCCAGGCATTTTGGAAGAAGGCGATCTCAAATTGCCCATCGAATTGCCA
TTTAGTGCACAACTTTCGAACAGTTGCAGCAACAACCATTCGCCCATTCA
GTAATTCAAAATGCTTTGCACAAGACAACGGGTCCCCATACACTTATATC
TCTAACAAACCACAAAACACCAATAAAGAACATAACAACCCAACACTCAT
TGCGCTAAGCATCGCTACGATGAACACCACGAAAAAGAGGAGCAAAATCC
ACAAAAAAAAAACAATGTGCTACCATCAGACACAGAATTTTCTCTCAATA
CCCACACCCCCACACACACGAATCTTTTTGAAGCCAAAACAACCACAAGC
TAAGGCCCAACTCCAGAGAAAGAAGCCAGAGATCCGCGGTACTCCCAACC
GCGACCACAAACATACAACGCCCATCAACCTTCGACACCAATCAAACTAA
AATAAACCAATAATACAAAACAAAAAAAATACTACACACCGCTACNACCA
ATACATAAATATCACCCAACACACACACCGCTCTCACCAACTACCGACAA
CACACACAGATAAATATTTTTTTAATACATTTACTTCTTGAATTAGTCTC
CCACCAAACCCACCAACTTACCCATCTCTGTCATACCACCAACACATACA
ACAATCAAACTCAATAAACCCACAACCCAACTAAATACTCCACTATCCAC
TATCCTAAATAAAGAATCTCCAAATAAAACTAATAGACTCTAAAGATATC
TAAAAGAGCCTTACATATAATATATTCCAATAACCATCTCACTCGTCTAA
TATACCAAACAACTCTACCATATCCACCCAACAACCAACTTCTGCTCAAC
CTGCCATTCCTTGCCAGCCA
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