DY270414

Overview
NameDY270414
Unique NameDY270414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270414_ssr1219 microsatellite DY270414_ssr1219:1219..1230. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 6.234e-58
Identity = 109/195 (55.90%), Postives = 141/195 (72.31%), Query Frame = 3
Query:  114 MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQS----PTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPGIFL 686
            MDE+    SS+S  PFL KTYEMVDD  ++S+VSWSQS  SFIVWNPP+F++DLLP++FKHNNFSSF+RQLNTYGFRK DP+QWEFAN++F+RGQ HL+KNIHRRKPVHSHS  +      PLT++ER     +IERL KE                 FE  V+ ++ERL+++E RQ  M+  ++ +L+KPG+ L
Sbjct:    1 MDENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVSFVSQVLEKPGLAL 195          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.698e-55
Identity = 104/185 (56.22%), Postives = 128/185 (69.19%), Query Frame = 3
Query:  129 GQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT--PLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPG 677
            G G    P PFLIKTYEMV+D  TN +VSW   G SF+VWNP DF++DLLP+YFKHNNFSSF+RQLNTYGFRKIDP++WEFANE+FIRG  HLLKNIHRRKPVHSHS Q+    PL E+ER E E +I RLK E S             +   + +Q++  RL  +E RQ  ++  L  +L++ G
Sbjct:   11 GGGGGGGPPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQRRG 195          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.182e-54
Identity = 105/203 (51.72%), Postives = 141/203 (69.46%), Query Frame = 3
Query:  126 QGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS--TQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPGIFLGS*SNKQKFTAKRK 728
            +G G   S  PFL KTYEMVDDP T+++V W+ +G SF+V N P+F +DLLP+YFKHNNFSSFVRQLNTYGFRK+DP+QWEFANE+FI+GQRH LKNIHRRKP+ SHS  +Q   PLT+ ER ++E +IERLK +N+                E  +Q++ E+L  +E++Q  +I  +  ++K PG FL S   +Q    K++
Sbjct:    2 EGGGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPG-FLSSFVQQQDHHRKKR 203          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 3.540e-53
Identity = 102/194 (52.58%), Postives = 141/194 (72.68%), Query Frame = 3
Query:  114 MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS---TQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPGIFL 686
            MDE+ G GSS+ P PFL KTYEMVDD  ++S+V+WS++  SFIV NP +F++DLLP++FKH NFSSF+RQLNTYGFRK+DP++WEF N++F+RG+ +L+KNIHRRKPVHSHS    Q+  PLTE+ER   E +IERLK E                EFE  V ++++RL+++E  Q  ++  ++ +L KPG+ L
Sbjct:    1 MDENNG-GSSSLP-PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQNPLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVAYVSQVLGKPGLSL 192          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.327e-51
Identity = 102/215 (47.44%), Postives = 136/215 (63.26%), Query Frame = 3
Query:  138 SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP-------------------LTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPGIFLGS*SNKQKFTAKR 725
            S+N+P PFL+KTY+MVDDP T+ +VSWS +  SF+VW+PP+FAKDLLP+YFKHNNFSSFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK+I RRKP H H+ Q   P                     E  +   E ++ERLK++ +                +  +Q + +RL+ +E RQ QM+  LA  + +PG FL     +Q  + KR
Sbjct:   33 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQMMSFLAKAVNRPG-FLAQFVQQQNESNKR 246          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 5.652e-51
Identity = 102/215 (47.44%), Postives = 135/215 (62.79%), Query Frame = 3
Query:  138 SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP-------------------LTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPGIFLGS*SNKQKFTAKR 725
            S+N+P PFL+KTY+MVDDP T+ +VSWS +  SF+VW+PP+FAKDLLP+YFKHNNFSSFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK+I RRKP H H+ Q   P                     E  +   E ++ERLK++ +                +  +Q + +RL+ +E RQ QM+  LA  +  PG FL     +Q  + KR
Sbjct:   35 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQMMSFLAKAVNSPG-FLAQFVQQQNESNKR 248          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 9.640e-51
Identity = 101/181 (55.80%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  135 GSSNSPAPFLIKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKP 674
            G    PAPFL+KTYEMVDDP T+++VSWS  S  SF+VWN P+FA  LLP YFKH+NFSSF+RQLNTYGFRKIDP++WEFANE FI+GQ+HLLKNIHRRKP+HSHS   P  L + ER  FE +IERL +E S                   ++ +  R+  +E RQT+MI  L    K P
Sbjct:   14 GGGGGPAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHS-HPPGALPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVLGMEQRQTKMIAFLQQASKNP 193          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.429e-48
Identity = 93/189 (49.21%), Postives = 127/189 (67.20%), Query Frame = 3
Query:  135 GSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS-------TQSPTP-LTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPG 677
            G + +P PFL+KTYEMVDDP T+++VSW     SF+VWN P+FA+DLLP+YFKH+NFSSFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK I+RRKP H ++         +P P   E  +   E +IE LK++ +                ++ +Q++ +RL+ +E RQ QM+  LA  +  PG
Sbjct:   30 GVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG 218          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 6.466e-47
Identity = 95/191 (49.74%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  138 SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVH---------SHS---TQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKP 674
            SSN+P PFL KTY+MVDD  T+S+VSWS +  SFIVW PP+FA+DLLP+ FKHNNFSSFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLL++I RRKP H          HS     S +   E  +   E ++ERLK++ +                +  +Q++ +RL+ +ENRQ Q++  LA  ++ P
Sbjct:   31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSP 221          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.441e-46
Identity = 92/186 (49.46%), Postives = 122/186 (65.59%), Query Frame = 3
Query:  144 NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPL--------TETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIPCLANLLKKPG 677
            NS  PFL KTY+MVDDPLTN +VSWS    SF+VW+ P+F+K LLP+YFKHNNFSSFVRQLNTYGFRK+DPD+WEFANE F+RG++ LLK+I RRKP H    Q  T +         E  +   E ++ERLK++ +                E  +Q+V ++++ +E RQ QM+  LA  ++ PG
Sbjct:   23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPG 208          
The following BLAST results are available for this feature:
BLAST of DY270414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFA4A_ARATH6.234e-5855.90Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA4D_ORYSJ1.698e-5556.22Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA4B_ORYSJ4.182e-5451.72Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA4C_ARATH3.540e-5352.58Heat stress transcription factor A-4c OS=Arabidops... [more]
HSF8_SOLLC4.327e-5147.44Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSF8_SOLPE5.652e-5147.44Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSFA5_ORYSJ9.640e-5155.80Heat stress transcription factor A-5 OS=Oryza sati... [more]
HSFA1_ORYSJ3.429e-4849.21Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA1D_ARATH6.466e-4749.74Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA1B_ARATH1.441e-4649.46Heat stress transcription factor A-1b OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270414 ID=DY270414; Name=DY270414; organism=Citrus clementina; type=EST; length=1316bp
CTTTGGTTTTCTTGTCGCAGCTTAGCTTTGTGCTGTAAAAGTTGTCAATA
TTGGACTGTTTGTATATGTAGGCTCTTGAAAGTTTAATAAATTTTCTTTC
GTAGAATTTAGTAATGGATGAATCACAGGGACAGGGTAGTTCAAATTCGC
CGGCACCTTTTCTCATCAAGACATATGAGATGGTGGATGATCCATTAACC
AACTCATTGGTGTCTTGGAGTCAAAGTGGCGGTAGTTTCATTGTCTGGAA
TCCCCCGGATTTTGCTAAAGATTTGCTGCCTCAGTACTTCAAGCACAATA
ATTTCTCCAGTTTTGTGAGGCAGCTGAATACATATGGATTCAGGAAGATT
GATCCTGATCAGTGGGAGTTTGCAAATGAGGAATTCATACGAGGACAGAG
GCATCTCTTAAAGAACATTCACAGACGCAAGCCAGTTCACAGCCATTCCA
CGCAGTCTCCCACTCCACTAACCGAAACGGAAAGAAATGAATTCGAGGCC
AAAATTGAGAGACTCAAAAAGGAGAATAGCTTACTTCAATTAGAGCTGCG
GAGGCGTGAGGGTGGAAATCACGAGTTTGAGTATCATGTTCAATCAGTAC
GCGAGCGTCTAAGGTACTTGGAAAATCGACAGACGCAAATGATCCCCTGT
TTAGCTAACCTGTTGAAAAAACCCGGGATTTTCCTCGGCTCCTAATCCAA
CAAGCAGAAGTTCACAGCAAAAAGAAAAAGCTGTTGAGGCCCTACGAATA
TTGAATAACTTTGATGGAGGTAAAATCCCCAGCCCTAAATTGTGAATGAA
AAGAAAAAAAAACCCCAAAAGCTAACTTCGAATCCACCCCCCGCGGTTGA
ATTTGAAAAAAATTGAACGGCCAAAATCCTCCGTGGAACTTTTGGGAACT
TTTTTTTGTACGGCCCTTGGGAAAGCTTTTTTATCCAACATGGATACTAA
TTTTCGAGAAATCACCACCCATCGCTCTGCGCCCCCCACAAAATACATAT
AAAAAACGGGGGGCCCAACTAAAAACAACTCAAAGAGTTTTTTTTATTGT
CTACTATCCCCCAAACCCCTTCGGTACGATCCCTTCACCCCCCCACCGCA
TCGAAATAACTACATACCAAAACAACACCCTGCGCGGGAAACCCTCAGCT
ATTCTCTCCATGCAATCATCAAAACAGCAATATACCTACATACAACAAAT
ATATATCAACCTATCTACTAATTAATTAATCGTTCATCCTAGCTGAGTGA
TGACCCATTCTCACTTAACATACGCCTTAATAACAACAATTGCCTGTGCC
AACCGATGAACACTAA
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