DY270424

Overview
NameDY270424
Unique NameDY270424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270424_ssr75 microsatellite DY270424_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14992 contig Ccv1_Contig14992:1..1249. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 2.277e-62
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 2
Query:  254 EKWGTHVMGTPAAPTCHPDNKKXXXXXXXXXXDNRAQYNNHHHPYLQYSPVERPS-GSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWNYYKVRLPLAH 799
            +KWGTHVMG PAAP  HPDN++          DN+      + PY+ YSPVE P+  +P+E ++ +F++WS KAET+A N+WHNLKT  S+SE AWGK+NLTAKAI  GGFE++++Q F T  NETLKKTFACYLST+TGPVAGT+YLSN  VAFCSDRPL FTAPSGQ++W+YY+V +PLA+
Sbjct:   37 KKWGTHVMGAPAAPVAHPDNQQAAAWVAG---DNQ---QTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLAN 213          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.180e-26
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 2
Query:  380 HPYLQYSPVERPSGS---PMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWNYYKVRLPL 793
            +PY+  SP E    S    ME++  V   W       + K E+LA N W +L+T  S ++AA G++  + K    GG+E I++QTF T   E L  +FACYLSTS GPV G LY+S+  +A+CSD PLS+     Q  W+YYKV +PL
Sbjct:   96 NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSYYKVVIPL 242          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.958e-25
Identity = 64/145 (44.14%), Postives = 88/145 (60.69%), Query Frame = 2
Query:  380 HPYLQYSPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKT-WNYYKVRLP 790
            +PY+  SP  R   + M+S+ +    W       + KAE LA N W +LKT  SV++AA  ++    K +  GG+E ++KQTF    +E L KT+ACYLSTS GPV G +YLS   +AF SD PLS+    G++T W+YYKV LP
Sbjct:   65 NPYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY--KEGEQTLWSYYKVVLP 204          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.308e-17
Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  380 HPYLQYSPVERPSGS---PMESILNVFNSWSN-------KAETLANNIW-HNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPL 733
            +PY+  +P E    S    MES+  V   W         KAE+LA N W H L+       AA G++  + K +  GG+E I++QTF T   E L+ +FACYLSTS GPV G LY+S   +A+CSD  L
Sbjct:   55 NPYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.207e-16
Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  467 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWNYYKVRLPL 793
            K ++  N +    K    ++E    K++L A+ ++ GG E IYK+ F     E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G+    +YKV +PL
Sbjct:   56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPL 164          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.176e-16
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  467 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWNYYKVRLPL 793
            K ++  N      K    ++E    K++L AK ++ GG E IYK+ F     E L K + CYLST+ G +AG L++S+  +AFCS+R +  T+P G  T  +YKV +PL
Sbjct:   48 KTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPL 156          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.224e-15
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  467 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWNYYKVRLPL 793
            K ++  N      K    ++E    K++L AK ++ GG E IYK+ F     E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G  +  +YKV +PL
Sbjct:   56 KTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPL 164          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.652e-15
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  467 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWNYYKVRLPL 793
            K +   N +    K    ++E    K++L A+ ++ GG E I+K+ F   + E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G     +YKV +PL
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPL 163          
BLAST of DY270424 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.353e-14
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  350 DNRAQYNNHHH------PYLQY-SPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSF-TAPSGQKTWNYYKV 781
            D+ A++  + H      PY+   SP         + +L V N         + KAE L   +  +LK + S+S+AA  +++   K I  GG E ++++ F     E L  +F CY+ST++GPV G +Y+SN  +AFCSD  +   ++  G     YYKV
Sbjct:   13 DSTAKHKTNSHGGRYDNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKV 171          
The following BLAST results are available for this feature:
BLAST of DY270424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH2.277e-6261.20GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH1.180e-2642.57GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH4.958e-2544.14GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH1.308e-1741.09Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML8_ARATH4.207e-1636.70Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML7_ARATH7.176e-1638.53GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML6_ARATH1.224e-1537.61GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH4.652e-1535.78GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH1.353e-1431.45GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270424 ID=DY270424; Name=DY270424; organism=Citrus clementina; type=EST; length=1250bp
CCCTTCAAGAATCTCTAACCACCGCACGCCTCACAATATTCCAATCAATC
AGGCATAGAATCCCTCAAAGAAGCTCTTTCTTTCTTGCAAATTACTTGGC
TTCAAATTTAAAACCAAAATGAACGGCACCACCACCCAGGAATCAAACCC
TTCTCATCACCAAACATCACTAAGCAGTACTAATCAAGAAATGCAATCTC
ATCAAGCTGCCGGTCCATCATCGTCATCTGGACCAGCAAGCACTGCAAGT
GCTGAGAAATGGGGAACTCATGTAATGGGGACGCCTGCTGCTCCCACGTG
TCATCCGGACAACAAGAAAGCAGCCTTGTGGGGAGCTGGAGCTGCTGGTG
ATAATCGAGCTCAATACAACAATCATCACCACCCGTACCTCCAGTACAGT
CCCGTTGAAAGGCCAAGCGGCAGCCCCATGGAATCTATTCTCAATGTCTT
CAACTCTTGGAGCAACAAGGCTGAGACCTTGGCCAATAACATTTGGCACA
ACCTTAAAACGAACTCATCTGTGTCAGAGGCAGCATGGGGGAAGATGAAT
CTGACTGCCAAAGCAATAAAAGGAGGAGGGTTTGAGACTATATACAAGCA
AACTTTTGCAACCCACCAGAATGAGACTTTGAAGAAGACATTTGCCTGTT
ACCTTTCAACATCAACAGGACCAGTGGCTGGAACTCTGTATCTCTCCAAT
GTTCATGTGGCTTTTTGCAGCGATCGCCCCCTGTCCTTCACTGCACCCTC
CGGTCAGAAAACTTGGAACTACTACAAGGTTAGGTTACCTTTGGCCCATG
ATTGGGGCCCACTCATCCAGTGATCATGAAGGAAAAATTCTTCCCAAAAA
AACATCCCAAATTGTTACAACCGAAGGGCCCCAAGTTTTGGGTTCCTGGG
GGTTTGTTAATTAGGACAAAACCACCTCCCGCCCCCTTTCCAAAAATTTT
CCCAAATTTTGGTAGCCCCCGGCAAAAGCGGTTTCACCCAATATGGGGCC
CGGACCCGAAAACGGGTCGTTTTTTTGTAACTTTGCCTCTTTTTGAAAAT
TTCAAAACAAAAAAATAATTTTTAGTTTTCCGGGTTCTCCTTTTTCTACC
CTTTAGAATAAAAATATAACCGCGGAATTTATTGGTGCAACCCGAAACAC
CCCCTCTCTTCCTCCCTTTGGGGGGTCTTTCTAAATATAAACCCCACCCC
CTGACCAAATCTTTATACCACAATAAAAATAAGACAAACCAAAACAAAAA
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