DY270428

Overview
NameDY270428
Unique NameDY270428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270428_ssr1211 microsatellite DY270428_ssr1211:1211..1220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3616 contig Ccv1_Contig3616:1..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.635e-24
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY  GVFLVT +F   YPF+  K  F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.635e-24
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY  GVFLVT +F   YPF+  K  F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.495e-24
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY  GVFLV+ +F   YPF+  K  F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.495e-24
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPY  GVFLVT +F   YPF+  K  F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.668e-24
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPY  GVFLVT +F   YPF+  K  F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.001e-23
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGPP+SPY  GVFLV+ +F   YPF+  K  F
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.717e-20
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHK 375
            MA++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP +SPY  GVFLV  +F   YPF+  K
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPK 66          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.773e-20
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP DSP+  GVFLVT +F   YPF+  K  F
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.354e-19
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPPDSPY  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.700e-19
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPP+SPY  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAF 69          
The following BLAST results are available for this feature:
BLAST of DY270428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UBC9_ARATH2.635e-2481.16SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH2.635e-2481.16Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC4.495e-2479.71Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC10_ARATH4.495e-2479.71Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH7.668e-2479.71Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH1.001e-2376.81Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC29_ARATH6.717e-2069.70Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC30_ARATH8.773e-2068.12Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBCD1_DROME4.354e-1965.22Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CAEEL9.700e-1963.77Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270428 ID=DY270428; Name=DY270428; organism=Citrus clementina; type=EST; length=1311bp
CAAAGGCAAGACCTTTTAGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCC
GCAGATCTGCTCCGAAGCCGTTCCCCTTTCTCACTGCTTTTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGTC
CGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGTTTGAGGTGTATTTTTGGTTACAAATTATTTTCGTCA
TTATTATCCCTTCAGGCGCCATAAAGGTCGCTTTTAGGAGCCCGGCCCGC
TGCCCAACCACCTACTGGCGCGCGACCAGTCCGCTTCGATTCACGTAAAG
ACCAGTATTCACACCTCTCTTTCCACTCCTAATGTCTCGCCATTCTATCT
GCGCGATACATCGGAGCAGTCTGAATAAGGAGCCTGTAGGTTGCGGGTCG
CGCCCCCCTCGCCCTCTCCATCCTTTCGCCTCCCTTCTACTTTCTTCTCT
TTCCTCTCCTCTTTGCTCCCCCATCCCCCCTTTGCTCCCCCTCATAGCGT
TCAAGTCCACCTCGTCGGGCAGGTTATTTGGTCATCTTTTTTGTTGTCTG
TGTTTCCCAGACGCAGTTGGCACCTTCTCCCCCCGGAGTCTAGCTGCGTC
TTTTCTCCGCCCTTCTCTACTAATTATCTTTTATTGCCACTTCAGGTATT
CTCGCCCTAATGGTCTGCTATTCTCCGGCTACAGTTCCCCTTCCCGTGCT
CGCAGGCATTGCCAGCCTCTTTTATTACCGCACGCGCATCGGGCCGTCCC
ATGTTTGCTGTCCGGTGCTATATCAGTTGGGTTATCGCTCTCTTTTCTCT
ATCCTTCTGTCGCTCCACACGCTGCGCCTTTAGTAGTCATTTGCCTTTAT
ATTTCTATTCTTATTCATCTCATTATCATTTCCAATAGCTCCGCTTTATG
TGACCAGGCTTTGCCGCCCTTCTTCCCCTCCTCTTCCGCGTTGCTTCTGC
TTTTCTCCTTTCTTTATATCACTTTTCTCTCCTCCGTTAATACTGCTCTC
TTCTTTATCTTTTGTACTCTCTACCGCCTGATTTCTCTGCCCCACCCCTC
TATGCTCGCACTCTCTCTCTTTCCGCTTTATCCGCTATCTCAACGCTGAT
CCAGCTGACCCCTCCTAATATCTAACCCCTAGTCTTGCCAACTGTAATAC
CTTCCTTCACT
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