DY270442

Overview
NameDY270442
Unique NameDY270442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1080
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3623 contig Ccv1_Contig3623:1..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY270442 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii GN=cp12 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.510e-15
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 3 
Query:  219 ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKD----SDPLEAYCKDNPQTDECRTYED 428
            +++KV+ ++K AE+AC     S +CA AWD VEELSAA SH ++  K     +DPLEA+CKD P  DECR YED
Sbjct:    8 LNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 80
The following BLAST results are available for this feature:
BLAST of DY270442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CP12_CHLRE8.510e-1552.70Calvin cycle protein CP12 OS=Chlamydomonas reinhar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270442 ID=DY270442; Name=DY270442; organism=Citrus clementina; type=EST; length=1080bp
CCAAAACAACCCCTTTTAAAGAAGAGCCAGAGGCGAGAATGGCAACAATA
GCCGGTGTCAATCTCTCAACTCCCAGCGTCTTTGCCAACTTCACAGACCC
GAAGTCAAAGGTTCAACCCAGCAGGTCTCTGTGGCTCAACAACCCATCAA
GGAAAAGGCCCGCTCAGTTTAGAACAGGGCGCATGCACATGCAACCCCTG
AGAGCTGCTCCCGATAGAATCTCAGAGAAGGTGGAGCAAAGCATCAAGAG
TGCAGAGGAGGCGTGCGAGGGGGACCCTGCTAGTGGCGAGTGTGCTGCTG
CATGGGACGAGGTGGAGGAGCTGAGTGCCGCGGCCAGCCATGCTAGAGAG
AGGAAGAAGGATTCCGATCCTTTGGAGGCTTACTGTAAGGACAACCCCCA
GACCGATGAGTGCCGCACTTATGAAGATTGATAACATCGTCCTTATGCTC
TTTTAATTATGTCTTTTTTTCCCCCCTTTTTAAATCCCTGCACGTTCTCC
CGTGGATGAGATCTTGACGTTTTCGTCCCCCCGCTATTCCTATATCTACC
TCACCTTATCTGCATCCTTTGAATGTGAATTTACTTCCCCTCACTTTCAC
CGACTTCCGCTCACTCGCCACAATTTTATTTTTCCCCTTCACTCACCCCC
CCTGTAACCACAATGATGAAATTTTGTCTATGATAAATGACATGCACGCA
GTTTCCCCCCACCCTTCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTCTTT
TTTTTTTCCCCATCCCCCCCTTACAATCAGTATTGCAGAGTAAACCGGAC
AAACGTAGATCAACATAACAGCCTCTCCTCTTCTCCCTTACCCTATCCTT
ATATTCCTCTTGGCTTTAATCTCGCTGCTCGTGTCTCCTTTTGCATAGCT
GACCCCTGCTCAGGGGCCAGCTCTATCCTCTCTCCACTCGTCTGACGATT
TCACAATTGCTCTTCATCTCACCCGAAGCACCTTCCTCATTTGCCGTCTC
TCCTTTAACTCCATGCTCTTTTTTCGGTCTGCGGTTTTACTCTTTATATA
CCCCCCCCCCATCCGCACACCTCCCCACCC
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