DY270608

Overview
NameDY270608
Unique NameDY270608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270608_ssr364 microsatellite DY270608_ssr364:364..375. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY270608 vs. ExPASy Swiss-Prot
Match: R18A1_ARATH (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.200e-19
Identity = 51/138 (36.96%), Postives = 63/138 (45.65%), Query Frame = 2 
Query:  254 YGTFQGVANYXXXXXXXXXXXXXXXXAGVSGQXXXXXXXXXXXPYYPQGYQTV-PGYAVAEGRPVRERRLPCCGLGVGWCLFILGFFLGTIPWYVGLFVLMCARIDIREKPGYXXXXXXXXXXXXXXXXGVTKGADEW 664
            YGTFQGVAN+                    G              Y QG+  V P Y V E RP+ E  LPCCGLG+GW LFI+GF  G IPWY+G F+++   +D REK GY                G+T   + W
Sbjct:   21 YGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTGDINIW 158
The following BLAST results are available for this feature:
BLAST of DY270608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
R18A1_ARATH2.200e-1936.9660S ribosomal protein L18a-1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP7YC15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270608 ID=DY270608; Name=DY270608; organism=Citrus clementina; type=EST; length=1175bp
CCAAAGATCCCAATTCATCCCATCAATCAAGATCATGAGTGAAGATGACA
AAAACAGAGCCGTTGTTGTTGGTCATCAACACCACCATCACCACCACGAT
CAGCAGTCACCACCACCGCCACCGCAACCACCGTCCCAATTCACCCCACC
GGTCATCACCATGAGTGAAGACGACAAAAACAGAGCCGCTGTTGTCGGTC
ATCAACACCATCATCATCACCCTGATCAACGGTCACCACCCCCACCACCC
CAGTACGGTACGTTTCAAGGCGTAGCCAATTACCCTCCGCCGCAGCCGCC
GGCAATTGGGTTCCCTCAGCCCGTGCCCCCAGCTGGCGTTTCCGGCCAAT
CCTCTTCGCATCTCCACCACCACCATCATTCTCCTTACTACCCCCAAGGA
TACCAAACTGTTCCAGGTTATGCCGTAGCTGAAGGGAGACCAGTGAGAGA
GCGTCGCCTTCCTTGCTGTGGTCTTGGTGTTGGCTGGTGCTTGTTTATTT
TGGGTTTCTTCCTTGGTACCATCCCATGGTATGTTGGGTTATTTGTGCTG
ATGTGTGCAAGGATTGACATCCGAGAGAAGCCTGGATATATTGCTTGCAC
CATTGCTGCTGTTCTTGCTACAATTGCAATTATTCTTGGTGTAACAAAGG
GAGCCGATGAGTGGTAGTTGTACAGGTGAAAAATGGATATACTCATCTCT
GAAGTCCTGAACTGTATCTGGGGTTTTAAACATCGTGTGAAATCATGAAA
GATCCAGTAAGTCCTTGAATGTTAATTTAGGTTAACGGTACTCCACAGAA
CTGCAAAGACTACAGTGCCTTTTGTTAGTGATAAACCTTGTTATTGGAGG
GATTTCTTTGGTATATAAAAAAAAAAATATTCAGTAATGTCCTTGACCTT
GTAAAATATGGGATTAAGAACCTTTCTTAATAAAAAAAAAAAAAAAAAAA
AACCCAACTTTCTTGAAAAAAATTGGCTTTAAAAAAAGCCTTGCTTTTCC
ATTTGTTGTCACCAAACAGGTTCCAATCCTTACAAAAAAAAATCATTTAT
TTCCCTCCCCCATATAATCCCCCAAAAGGGAGTCTAATTAACGGGGGGCA
AAAACGTTTTTTTCCCGGCGCCCCCCCGGCCCCCCGGGGTCCCCAAACTC
CTCTCGAAGATTTTATTTTTTAGCC
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