DY270622

Overview
NameDY270622
Unique NameDY270622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9469 contig Ccv1_Contig9469:18..1251. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.476e-29
Identity = 80/242 (33.06%), Postives = 128/242 (52.89%), Query Frame = 1
Query:   13 SKTIS*KMASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLN------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIVHFNVQ 720
            S  +S K  S +    PC    +  FP  R  P L  R+   +     DN+ +   + R + +      + +P++ +  +S  G+ D +   R+++QM++TM+RI ED     +T P +      G    R PW I++ E++ ++R D+PG+S+ DVKV VE+ +LVIK++  + N           E+ W    Y  Y TR+ LPDN E EK++AE+KDGVLYITIPK    R ++   +Q
Sbjct:   12 SPILSQKPGSSVKSTPPC----MASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFED----AITIPGRN----IGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGG---------EDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.927e-29
Identity = 79/232 (34.05%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   52 ICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQR--------SSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWP-SQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIVHFNVQ 720
            +C+P A        S     +   R    RI+A      S+D +Q+        SS+ +   ++    VS  G+ D     RT++QM++TM+R+ ED      T P S + R  SG    R PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E+ +           + ++ W      SY TR+ LPDN E +KI+AE+K+GVL+ITIPK    R+++   +Q
Sbjct:   12 LCSPLAPSPSVSSKSATPFSVSFPRKIPSRIRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFED------TMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKE----------DSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.565e-29
Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  157 DNRGSLDHLQRSSLN---QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIVHFNVQ 720
            DN   + H+ +       + +P++ A  +S  GI D +   R+++Q+++TM+R+ ED     +T+P +      G    R PW I++ E++ ++R D+PG+++ DVKV VE+ MLVIK       E   D S       W S  Y SY TR+ LPDN E +K++AE+K+GVLYITIPK    R+++   VQ
Sbjct:    6 DNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDT----MTFPGRN----IGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-------WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQVQ 181          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.783e-28
Identity = 73/200 (36.50%), Postives = 113/200 (56.50%), Query Frame = 1
Query:  145 KAVADNRGSLDHLQRSSLN---------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIVHFNV 717
            +A  DN+ +   +  SS           + +P + A  VS  G+ D     RT++QM++TM+R+ ED     +T+P +     SG    RTPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++  W  N Y SY TR++LPDNV  +KI+AE+K+GVL+I+IPK    ++++   +
Sbjct:   49 RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDT----MTFPGRNRA--SGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDG-------RDKHSWGRN-YSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.097e-28
Identity = 73/200 (36.50%), Postives = 119/200 (59.50%), Query Frame = 1
Query:  121 NRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIVHFNVQ 720
            N+D    +    +N+G  +   + S  + +P++ A  VS  G+ D     RT++QMM+TM+R+ ED     +T+P  + R   G    R PW I++ EN+ K+R D+PG+S+ +VKV VE+ +LVIK E  ++ E+  D S       W  N Y SY TR++LPDNV+ +K++AE+K+GVL I+IPK    +++    ++
Sbjct:   61 NKDTSVDVHVSNNNQGGNN---QGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDT----MTFPGSRNR---GTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEH-KKEESGKDDS-------WGRN-YSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEIK 241          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.159e-24
Identity = 64/190 (33.68%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  154 ADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE-KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIVHFNVQ 720
            A N G+    Q+ +  Q +P++    +S  G+ D     RT++QM++TM+R+ +D     V +P++  R  +   R R PW I E E + K+R D+PG+SR +V+V VE+  LVI+ E K +  E   +G     +  W      SY  R+ALPD  +  +++AE+K+GVL +++PK  + R+++   VQ
Sbjct:   63 AQNAGN----QQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDD----AVGFPTR--RSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGG----DGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQVQ 238          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.024e-22
Identity = 61/182 (33.52%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  184 QRSSLNQSQPKKRAA--PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQER-VRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIVHFNVQ 720
            Q+ +  Q +P++ +A   +S  G+ D     RT++QM++TM+RI +D     + +P+   R + +G    R PW + E + + ++R D+PG+SR +VKV VE+  LVI+ E  +      +GS    +  W      SY  R+ALPD  +  K++AE+K+GVL +T+PK    R+++   VQ
Sbjct:   67 QQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDD---VALGFPATPRRSLATG--EVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSG---DGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQVQ 240          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.433e-16
Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 1
Query:  214 KKRAAPVSSPG---------IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIQAEVKDGVLYITIPKASSTRQIVHFNVQ*D 726
            +   AP+S  G         ++D F A R+V Q+M  M+++ME+PF             R   R  R  W +RE E   ++++D+PG+++ DVKV VE++ L+IK+E  +  E        EEE+         YS+RI L  N+ + + I+AE+K+GVL +T+PK     +   F V  D
Sbjct:   47 RSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPF---------MAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETE--------EEEQR------RRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.286e-16
Identity = 54/161 (33.54%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  202 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIQAEVKDGVLYITIPK 681
            +S P++R    S   ++D F   R+V Q++  M++ ME+P        + +    SG RRG   W I+E ++   +R+D+PG+SR DVK+ +E+  LVI+ E          G   E+  E   +G   +++RI LPD + + ++I+AE+K+GVL + IPK
Sbjct:   55 RSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL-----SATRGMGASGARRG---WDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGE----------GKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPK 195          
BLAST of DY270622 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.584e-15
Identity = 38/102 (37.25%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  400 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTRQIV 705
            ++E ++ YK+R +VPG+++ DVK+ V + +L IK +    ++A  +  + EE+E W S  YG Y+T ++LPD+ + E I+AE+K+GVL + IP+    ++ V
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGD----HKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNV 226          
The following BLAST results are available for this feature:
BLAST of DY270622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS21C_PEA1.476e-2933.06Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH1.927e-2934.0525.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN9.565e-2936.65Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_SOLLC2.783e-2836.50Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY8.097e-2836.50Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_WHEAT4.159e-2433.68Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ1.024e-2233.5226.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23C_CHERU1.433e-1632.60Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS23M_ARATH9.286e-1633.5423.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS26M_ARATH1.584e-1537.2526.5 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270622 ID=DY270622; Name=DY270622; organism=Citrus clementina; type=EST; length=1234bp
GACATCTCTCAATCAAAAACTATATCTTAGAAAATGGCATCTCATCTTGG
TATCTGTACTCCCTGTGCGTCCGAAATAATCACCGGTTTTCCCAGCTACA
GGTCTCCACCTTTGTTGAGAAATAGAGACTTTTGTGGCAGGATAAAGGCC
GTGGCAGATAACAGAGGCAGCCTTGATCACTTGCAAAGATCGTCGCTGAA
TCAATCCCAGCCAAAAAAGAGAGCGGCCCCAGTTTCATCTCCAGGGATAT
GGGATAGTTTTCCTGCTGCGAGGACGGTGCAACAGATGATGGAAACCATG
GAAAGAATAATGGAGGATCCTTTTGCTTACGGAGTCACTTGGCCTTCACA
ACAAGAAAGGGTGAGAAGTGGATACAGACGGGGAAGAACGCCTTGGGCCA
TCAGGGAAACGGAAAACGACTACAAGATTAGGTTAGACGTGCCTGGCATG
AGCAGGAATGATGTTAAGGTACGGGTTGAAGAGAGCATGCTCGTAATCAA
GGCAGAAAAGGCTCAAAGGAACGAAGCAAACACTGATGGAAGTACAGTTG
AGGAAGAAGAAGAGTGGCCAAGCAATGGTTACGGAAGCTACAGCACTAGA
ATTGCATTGCCTGACAACGTAGAGTTTGAGAAGATTCAAGCAGAGGTGAA
AGATGGCGTACTGTATATAACCATTCCCAAGGCCAGCTCCACCCGCCAAA
TCGTCCACTTTAATGTCCAATAGGACAAGTATTCTGGTAACCTCCAGTTT
CCACTAGGACAAACCAAGATCTGCCCAGAGGAAGGTGGTGGGTAGAAAAT
AAGTGCCAGTAAGGTTAATTTGATTTCCTCCTGTAATTCCAACCGGGAAG
GTTAGCCAAAATATGGTTTAGACTGGTCCAAACCTCCCGCTAATCTTTTT
GTCTTAAGAATCAATTTTGCGTCCAATCACCGGTCCTTTTACTAAAAAAA
AAAAAAAAAAAAAACCCCCCTTTCTCTTACAAATTGGCCTTTTAAAAAAA
CCCTTTGCTTTCCCATTTTTTCCCACACAACCGTCTCCTTTCATTCAAAA
AAAAATCATTATTTTCCCCCCCCACGAAAATCCCCCCTAAGAGGAATCTA
TAATAAAGGAGCTATAGCCGGTATTCCCGGACCCCCCCTGCGCCCGAGTC
TCCCAAATCCTCCCATAAGTTTCTTTTTTTCTCAAAAAAAATAAAATTTT
TTCTCCTCCTTTCTTTAATAAAAAACACCCTCCC
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