DY270633

Overview
NameDY270633
Unique NameDY270633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1151
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270633_ssr485 microsatellite DY270633_ssr485:485..499. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 4.809e-96
Identity = 176/263 (66.92%), Postives = 202/263 (76.81%), Query Frame = 3
Query:   78 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFNWNLL*HDRVENGPSFGERNWKQNLRRIQILCLPKCEKICCQPP 866
            MAM++ A + I A +                    KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRA+DLEGKT+GTVG GRIGKLLLQRLKPF  NLL HDR++  P   +    + +  +  + LPKC+ I    P
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEM-LPKCDVIVINMP 262          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 348.977 bits (894), Expect = 3.117e-95
Identity = 176/230 (76.52%), Postives = 187/230 (81.30%), Query Frame = 3
Query:   78 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFNWNLL*HDRVE 767
            MAM RVAS+A  A                      KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DL      GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RA+DLEGKTVGTVG GRIG+LLLQRLKPFN NLL HDR++
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASPGP---KKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 227          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 6.726e-90
Identity = 166/228 (72.81%), Postives = 184/228 (80.70%), Query Frame = 3
Query:  183 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFNWNLL*HDRVENGPSFGERNWKQNLRRIQILCLPKCEKICCQPP 866
            KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+AYRA+DLEGKTVGTVG GRIG+LLLQRLKPFN NLL HDR++  P   E+             LPKC+ I    P
Sbjct:   28 KKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPEL-EKEIGAKYEEDLDAMLPKCDVIVINTP 254          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 3.338e-89
Identity = 159/228 (69.74%), Postives = 184/228 (80.70%), Query Frame = 3
Query:  183 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFNWNLL*HDRVENGPSFGERNWKQNLRRIQILCLPKCEKICCQPP 866
            KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+LMRIL+L+RNFLPGHHQ+++GEWNVAG+A+R +DLEGKTVGTVG GRIG+LLLQRLKPFN NL+ HDRV+  P   E+             LPKC+ +    P
Sbjct:   30 KKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMYHDRVKIDPEL-EKEIGAKYEEDLDAMLPKCDVVVINMP 256          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.714e-85
Identity = 157/228 (68.86%), Postives = 179/228 (78.51%), Query Frame = 3
Query:  183 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFNWNLL*HDRVENGPSFGERNWKQNLRRIQILCLPKCEKICCQPP 866
            KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+A+RA+DLEGKTVGTVG GR G+LLLQRLKPFN NLL HDR++  P   E+             LPKC+ +    P
Sbjct:   29 KKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPEL-EKEIGAKFEEDLDAMLPKCDVVVINTP 255          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 6.575e-53
Identity = 103/186 (55.38%), Postives = 131/186 (70.43%), Query Frame = 3
Query:  186 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXG--LTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFN 737
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL+     G  ++V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+ISG WNVA +A  + D+EGK + T+G GRIG  +L+RL  FN
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFN 187          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.122e-52
Identity = 108/231 (46.75%), Postives = 148/231 (64.07%), Query Frame = 3
Query:  186 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFNWNLL*HDRVENGPSFGERNWKQNLRRIQIL--CLPKCEKICCQPP 866
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DLN       G+TVAEVTGSNVVSVAE  LM IL+LVRNF+P H Q+  G W+VA  A    DLEGK VGTVG GRIG+ +L+RLKPF+   L +   +  P   E+  +   RR+  L   L +C+ +    P
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDCKELLY--YDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCP 231          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.122e-52
Identity = 100/182 (54.95%), Postives = 130/182 (71.43%), Query Frame = 3
Query:  198 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFN 737
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL+       G+TVAEVTGSNVVSVAE  +M IL+LVRNF+P H Q+ +G+WNVA VA    DLE K VGTVG GRIG+ +L+RLKPF+
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFD 183          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 8.608e-45
Identity = 87/185 (47.03%), Postives = 126/185 (68.11%), Query Frame = 3
Query:  186 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFN 737
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   +DLE K + TVG GRIG  +L+RL  FN
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFN 189          
BLAST of DY270633 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 8.608e-45
Identity = 87/185 (47.03%), Postives = 126/185 (68.11%), Query Frame = 3
Query:  186 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPFN 737
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   +DLE K + TVG GRIG  +L+RL  FN
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFN 189          
The following BLAST results are available for this feature:
BLAST of DY270633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
FDH_ARATH4.809e-9666.92Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH_SOLTU3.117e-9576.52Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH1_ORYSJ6.726e-9072.81Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ3.338e-8969.74Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_HORVU1.714e-8568.86Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_PICAN6.575e-5355.38Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH_NEUCR1.122e-5246.75Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_EMENI1.122e-5254.95Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH2_YEAST8.608e-4547.03Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
FDH1_YEAST8.608e-4547.03Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YD20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270633 ID=DY270633; Name=DY270633; organism=Citrus clementina; type=EST; length=1151bp
GAAAAGTTTTCGCCTATAAAAACGCTGTGCTTTAGTGAGGACTCGGCAGT
GTGAGTGACAAATTATATAATTGGGAGATGGCCATGAAGAGAGTAGCTAG
CTCTGCAATTAACGCTTTTGCTTCGTCGGGATATCTTCGTTCATCGTCGA
GGTTTTCTCGACACTATGCTTCTTCTGGAAGTAAGAAGATTGTTGGGGTG
TTCTACAAGGGCAATGAATACGCTTCAATGAATCCCAACTTTCTTGGTTG
TGTGGAGGGAGGCTGTGGTCTGCGTGAATGGCTGGAATCGAAAGGTCACC
AATATATTGTCACTGATGACAAAGAGGGACCAGACTGTGAACTAGAGAAA
CATATTCCTGATCTCCACGTCCTCATATCTACCCCCTTCCACCCTGCCTA
TGTTACGGCGGAAAGGATTAAGAAGGCCAAAAATTTGCAACTGCTTCTCA
CTGCTGGAGTTGGCTCTGATCATATTGATCTAAATGCTGCTGCTGCTGCT
GGTTTAACTGTTGCTGAAGTTACTGGAAGCAATGTGGTTTCAGTTGCTGA
GGACGAGCTTATGAGAATCCTTATTCTTGTCCGTAATTTCTTACCTGGAC
ACCATCAAGTTATCAGTGGGGAATGGAATGTTGCCGGTGTTGCTTATAGA
GCTCATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTGGACGCAT
TGGCAAGCTGTTGCTCCAACGACTTAAACCTTTCAATTGGAACCTCCTTT
AACATGACCGGGTTGAAAATGGACCCTCATTTGGAGAAAGAAACTGGAAG
CAAAATTTGAGGAGGATCCAAATACTATGCCTCCCCAAATGTGAAAAAAT
TTGTTGCCAACCCCCCTCCAAAAAAAAAAGAAAAAGAGGGGATGTTTTGA
AAAAAAATAGGATTGTCAAGAAAAAAAAAAGGGGGTTTCTGGTTTTTCAA
AAAAGGGTCCGGGGAACCAATCAAGGAACCCCCCAAATCCGTTGTGTGGA
CGCCCTGGCCCTAATGGGAAACCATTGGCAGGGTATATAAGGGGGGGAGG
TTTTGGAAAACCCCCCACACCACGCTCCCCAAAGGGGACACCCCCCCCGG
GGGCGTTTATAACGCCCCAAAATACGGGGGACAAGAACCCCCCCCCCTCG
G
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