DY270634

Overview
NameDY270634
Unique NameDY270634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1101
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 2.056e-64
Identity = 136/210 (64.76%), Postives = 159/210 (75.71%), Query Frame = 2
Query:   65 MQGVVLNPT-YSR-PHQTLDSPSCSRPASKSTKSFFGERVS--LTRWRNPVRHSSCRLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVQITGPGS 682
            MQ + LNP   SR P Q +D  S S       +    +R    + R  NP+R    R L  R+    R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE++ DEETGLELNEENIEKVLEEIRPYL+G A GSL+LV I++PIVK++ITGP +
Sbjct:    1 MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQL-FRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAA 209          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.404e-51
Identity = 114/214 (53.27%), Postives = 143/214 (66.82%), Query Frame = 2
Query:  107 QTLDSPSCSRPA---SKSTKSFFGERVSLTRWRNPVRHSSCRLLLIRKRGAARRN-VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVQITGPGSWSHDCSCGCYPKICEK 730
            QT   P  +  A   S +T S    +V+   W +    SS    L+      R   V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIERRLMEKIP++ AVE V D+ETGLELNEEN+EKVL EIRPYL G  GG L+ + I  PIVKV++TGP +           K+ EK
Sbjct:    2 QTTTVPMAAAAAVAPSTTTSSSASFKVAAYAWSSCRSSSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREK 215          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.086e-44
Identity = 90/128 (70.31%), Postives = 106/128 (82.81%), Query Frame = 2
Query:  302 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET-GLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVQITGPGS 682
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE RL +KIPEI++VE   + ET GLELN+ENIEKVL E+RPYL G  GG LELV ID  +VKV++TGP +
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAA 209          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.181e-19
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  290 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVA-VESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVQITGPGS 682
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIER L EK  + +  +  V DEE   ++  E +   L+ +RP  +   GGS+E+++++     V+  GP S
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEVLSVEGEDCVVKYVGPES 208          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.084e-16
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  317 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 526
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER L+E++P +V VE V
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEEVPGVVEVEQV 110          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.494e-14
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  323 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 526
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE RL ++I   + VE+V
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSLVVEAV 112          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.548e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  269 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 526
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.548e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  269 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 526
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.196e-13
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  311 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE-ETGLELNEENIEKVLEEIR 592
            T   I+ +LD  IRP +  DGG++     +G VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE +  +E   E  EK L+ ++
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMIESEFERFEKNLKTLK 273          
BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NFU1_DROPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.385e-12
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  311 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVLEEIRP--YLVGAAGG 619
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+   +   E E  EK L++  P    VG  GG
Sbjct:  174 TVMMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDDADRMADKEFERFEKNLKQKEPAGAPVGIGGG 280          
The following BLAST results are available for this feature:
BLAST of DY270634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIFU2_ARATH2.056e-6464.76NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ3.404e-5153.27NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH3.086e-4470.31NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ARATH1.181e-1943.18NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
YUTI_BACSU2.084e-1652.86Putative nitrogen fixation protein yutI OS=Bacillu... [more]
NIFU_ANASL1.494e-1455.07Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
NIFU_ANASP2.548e-1447.25Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ2.548e-1447.25Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NFU1_DROME8.196e-1341.67NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPE2.385e-1240.19NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YD22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270634 ID=DY270634; Name=DY270634; organism=Citrus clementina; type=EST; length=1101bp
TCAAATCGAATCCTCTGAAAGGAAAAAAAAAAAAGTATACACCCGAAGAA
ATACAAAGAGAAAGATGCAAGGCGTTGTGTTGAACCCAACTTACAGTCGC
CCTCACCAAACCCTAGACTCTCCTTCTTGTTCTCGTCCTGCCTCTAAGAG
TACTAAAAGTTTCTTTGGAGAACGAGTTTCGCTTACGAGGTGGCGGAATC
CGGTGCGTCACAGCTCGTGTCGGTTACTGCTGATTCGGAAGCGTGGGGCC
GCGCGAAGGAACGTCATAAAGGCTGTGGCTACTCCTGATTCAGCTATTGA
GTTACCTTTAACTGCTGAGAATATTGAAAGTGTATTGGATGAAATTCGAC
CATATCTTATATCAGATGGGGGAAATGTGGCATTACATGAGATTGATGGC
AATGTTGTACGATTGAAGCTACAGGGAGCATGTGGGTCTTGTCCCAGTTC
TGTTATGACGATGAAGATGGGTATTGAGCGTCGCTTAATGGAGAAGATCC
CCGAGATAGTTGCAGTGGAATCGGTAGCAGATGAAGAAACTGGGCTTGAG
CTGAATGAAGAAAATATAGAGAAGGTACTTGAGGAAATCAGGCCCTATCT
TGTTGGGGCAGCAGGTGGATCACTTGAACTTGTGGCAATTGATGAGCCCA
TAGTTAAAGTTCAAATTACGGGTCCCGGGAGCTGGAGTCATGACTGTTCG
TGTGGCTGTTACCCCAAAATTTGCGAAAAAAAATCCCACCCATTGGCACA
GTTTCACTTCCGTAATGTCCAGCAGCCTGGGGTCTGAATAATTCCTGGGG
CTTTTACCCAAAAAGTTGCTTGAAAAAATCCCCACCATTGCCCCCATTCA
ACTTTCGGAATGTCCACATCTTAAACGAAAATACAACCTCTTTACAGCTT
CCCTTTAGAATAATAACACCACAAACTAATTCCTACCCTCCTACTTTTCC
CTGTACTCCCGCTTCCACAACTACCCCACCACATACCCACTCCACCACCC
CCACCCCATCCAAAATTACCACCAACTACGACCATCAACCAACAGCCGCC
ACTTTCTCGCCACACATAAAAACAAACACAAAACAAACCCCCCTCCTTCC
C
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