DY270640

Overview
NameDY270640
Unique NameDY270640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270640 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.312e-40
Identity = 77/176 (43.75%), Postives = 110/176 (62.50%), Query Frame = 2
Query:  221 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSPSGKTAVVYNQVKEKA 748
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+ + +G++ ++   F++WV  G A                G K+  LTGR E  R+VT  NL +AGF+ W KLIL+GS   GKTA  Y   +  A
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNA 216          

HSP 2 Score: 21.1718 bits (43), Expect = 1.312e-40
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 3
Query:  777 NIGDQWSDPPGPNPRNRT 830
            N GDQWSD  G +   R+
Sbjct:  227 NSGDQWSDLLGSSMSYRS 244          
BLAST of DY270640 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.457e-37
Identity = 79/172 (45.93%), Postives = 108/172 (62.79%), Query Frame = 2
Query:  215 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKG-SSPSGKTAVVY 727
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG++TWEKLILK    PS   AV Y
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSY 207          
BLAST of DY270640 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.457e-37
Identity = 79/172 (45.93%), Postives = 108/172 (62.79%), Query Frame = 2
Query:  215 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKG-SSPSGKTAVVY 727
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG++TWEKLILK    PS   AV Y
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSY 204          
BLAST of DY270640 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.407e-32
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 2
Query:  194 GSRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILK 691
            G R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KIVFL+GR  D+  VTEANLK AGF+TWE+LILK
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILK 195          
BLAST of DY270640 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.586e-27
Identity = 64/175 (36.57%), Postives = 101/175 (57.71%), Query Frame = 2
Query:  224 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTG-KAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSPSGKTAVVYNQVKE 742
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P  +  W+ TG                   GI+ + L+ R +  +NVT  NL+ AG   W+ LILK +  + +  V  ++V++
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNGSNLRQVVYKSKVRK 225          

HSP 2 Score: 22.3274 bits (46), Expect = 1.586e-27
Identity = 12/23 (52.17%), Postives = 13/23 (56.52%), Query Frame = 3
Query:  777 NIGDQWS----DPPG-----PNP 818
            NIGDQW+    D PG     PNP
Sbjct:  237 NIGDQWADLVEDTPGRVFKLPNP 259          
BLAST of DY270640 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.402e-25
Identity = 63/170 (37.06%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  224 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKA-XXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSPSGKTAVVY 727
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P  +  W+ +G++                 GI+ + ++ R +    VT  NLK  G   W+ LILK +  S  T VVY
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILKPNG-SKLTQVVY 224          

HSP 2 Score: 22.3274 bits (46), Expect = 1.402e-25
Identity = 12/23 (52.17%), Postives = 13/23 (56.52%), Query Frame = 3
Query:  777 NIGDQWS----DPPG-----PNP 818
            NIGDQW+    D PG     PNP
Sbjct:  242 NIGDQWADLVEDTPGRVFKLPNP 264          
The following BLAST results are available for this feature:
BLAST of DY270640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC1.312e-4043.75Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN1.457e-3745.93Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.457e-3745.93Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN2.407e-3243.37Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH1.586e-2736.57Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH1.402e-2537.06Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP7YE05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270640 ID=DY270640; Name=DY270640; organism=Citrus clementina; type=EST; length=1227bp
CAATATTACAGTTGTAATGAGCATGGGAGGGGTGTCACTGCCATTATTTT
TCTTTTTTCTGGCTACCATATCAGCAACATCCCATGGATTTAGCATGGAC
ATCCGCCATCTTTTTCTGGCTACCATACCAGCAACATCCCATGGATTTAG
CATGGACATCCCCCATCAGATTCATCTTCTCCGACCGAAAGCCGGTTCCC
GGAACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGCGACTCGGAGTG
GAAACTAATAACGTTATAGGATGGGCGACTGTTCCCGAAAAATGTGCAGA
CTACGTGGGGCATTACATGTTAGGCCAGCAGTACCGCCTGGACTCTGAAG
TGGTTGCTAATGAGGCCATTCTCCATGCTCAGAGCCTCACGCTTGCTGGC
GACGGCAAGGACATTTGGGTTTTCGACATAGATGAAACCTCGCTATGTAA
TTTGCCATATTATGCTAAGAATGGATTCGGGGTGAAGCCGTACAACCCTA
CTATGTTTAATGAATGGGTTAACACCGGAAAAGCACCACCGCTGCCAGAG
AGCCTTAAGCTTTACAAAAAATTATTATTGCTTGGAATTAAGATTGTATT
CCTCACGGGAAGACCAGAAGATCAGAGAAATGTTACAGAAGCTAATTTAA
AGCATGCTGGATTCAACACTTGGGAAAAGCTCATCCTCAAGGGATCATCT
CCTTCAGGAAAAACAGCAGTGGTGTACAATCAAGTGAAAGAAAAAGCCTG
AGATGAAAGGGTACAAAATTATTGAAAACATAGGTGATCAATGGAGCGAT
CCCCCGGGCCCCAACCCCCGCAATCGAACTTTAAGCCGCCAGACCCAAAG
AATACTTTGGCAATTAAAAAAATAAAGTTCACTTGGAATTCAAAAAAAAA
AACCAAGGGCCTCCATTTTCCCAAAAAAAAAAAATAAAAAACCCCCCACT
CCTTGAAAAATTGCGCTATAAAAAAAAACCTCCCTCTACAATTTTTGCCA
CAAACAGTGTTCTTTAACTTCTAAAATAAACCTTACTTTATTCACACACC
ACAAAAACTCCAAAAGAAAATAAATATAACAAAGGATAAATCACATAACC
GGAAAAGCACCAGACCAAGATACTCCACACTAATGCCGGACCGACATCCT
CAGATGCACTCATAATGAGTAAACACAACGTCTACTCAACACAATACATC
ACTCTCACAACATACTCCATGCTACTC
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